| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,481,550 – 5,481,642 |
| Length | 92 |
| Max. P | 0.747646 |
| Location | 5,481,550 – 5,481,642 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 75.97 |
| Mean single sequence MFE | -23.90 |
| Consensus MFE | -10.88 |
| Energy contribution | -12.10 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.747646 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5481550 92 - 22407834 CAUGCAAAUGAGACAUUAGUCAAACGCAGUGGCCCAUCAGCCUGGUCCGCUGAAUAUCGGUCUAUAUAU----GUACAUAUA-----UA--U------GU--GAACAUAGA ........((((((....))).....((((((.(((......))).))))))....)))((.(((((((----((....)))-----))--)------))--).))..... ( -21.80) >DroSec_CAF1 100746 96 - 1 CAUGCAAAUGAGACAUUAGUCAAACGCAGUGGCCCAUCAGCCUGGUCCGCUGAAUAUCGGUCUAUAUGU----GUACAUAUA-----UA--UACGU--AU--GACCAUAGA (((....))).(((....))).....((((((.(((......))).))))))......((((.((((((----(((......-----))--)))))--))--))))..... ( -29.10) >DroSim_CAF1 112091 84 - 1 CAUGCAAAUGAGACAUUAGUCAAACGCAGCGGCCCAUCAGCCUGGUCCGCUGAAUAUCGGUCUAUAUGU----GUACAUAUA-----UA------------------UAGA ........((((((....))).....((((((.(((......))).))))))....))).(((((((((----(....))))-----))------------------)))) ( -24.40) >DroEre_CAF1 101922 102 - 1 CAUGCAAAUGAGACAUUAGUCAAACGCAGUGGCCCAUCAGCCUGGGCCGCUGAAUAUCGGGCUAUAUAU----GCACACAUA-----UACAUAUAUAUAUUACAGCAUAGA .((((...........(((((.....((((((((((......)))))))))).......)))))(((((----(....))))-----))...............))))... ( -31.70) >DroYak_CAF1 109353 105 - 1 CAUGCAAAUGAGACAUUAGUCAAACGCAGUGGCCCAUCAGCCUGGUCCGCUGAAUAUCGCUCCAUAUA------CAUAUAUACACGUUAUAUACGUACAUAACAACAUAGA ...((......(((....))).....((((((.(((......))).))))))......))......((------(.((((((.....)))))).))).............. ( -20.40) >DroAna_CAF1 108429 82 - 1 CAUGCAAAUGAGACAUUAGUCAAACGCACUGGCCCAUCAGCCU-------------UUGGUCUAUAUAUAGCUGGUCGUAUA-----UA--U------AC--UGCCAUG-G ((((((.....(((....)))..(((.((..(((((.......-------------.)))..........))..)))))...-----..--.------..--)).))))-. ( -16.00) >consensus CAUGCAAAUGAGACAUUAGUCAAACGCAGUGGCCCAUCAGCCUGGUCCGCUGAAUAUCGGUCUAUAUAU____GUACAUAUA_____UA__U______AU__CAACAUAGA (((....))).(((....))).....((((((.(((......))).))))))........................................................... (-10.88 = -12.10 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:24 2006