Locus 2023

Sequence ID 2L_DroMel_CAF1
Location 5,479,969 – 5,480,081
Length 112
Max. P 0.660122
window3257

overview

Window 7

Location 5,479,969 – 5,480,081
Length 112
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 83.70
Mean single sequence MFE -32.82
Consensus MFE -23.09
Energy contribution -23.07
Covariance contribution -0.03
Combinations/Pair 1.12
Mean z-score -2.25
Structure conservation index 0.70
SVM decision value 0.27
SVM RNA-class probability 0.660122
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5479969 112 - 22407834
------CCGCGGCAGCGCGCAGGGCAAACCCAGGCAGACAUUCAGUCAGCCUGCCGGCAGGACAUCGUUUAAUUGCGAACAAGUUUUUUAACACGAUGUCGGACAACCUCCGCGCCUU
------....(((((.((((.(((....)))..)).(((.....))).)))))))(((..((((((((((((..((......))...)))).))))))))(((.....)))..))).. ( -43.00)
>DroPse_CAF1 117759 91 - 1
------------------------CAGACCCUGGCAGACAUUCAGUCAGCC--CCGGCAGGACAUCGUUUAAUUGCGAACAAGUUUUUUAACACGAUGUUGGACAACCUUCU-GGCUU
------------------------((((((..(((.(((.....))).)))--..))...((((((((((((..((......))...)))).)))))))).........)))-).... ( -23.80)
>DroEre_CAF1 100340 96 - 1
----------------------GGCAAGCCCAGGCAGACAUUCAGUCAGCCUGCCGGCAGGACAUCGUUUAAUUGCGAACAAGUUUUUUAACACGAUGUCGGACAACCUCCGCGCCUU
----------------------(((..((((((((.(((.....))).)))))..)))..((((((((((((..((......))...)))).))))))))(((.....)))..))).. ( -37.00)
>DroYak_CAF1 107802 99 - 1
-------------------GAGGGCAAACCCAGGCAGACAUUCAGUCAGCCUGCCGGCAGGACAUCGUUUAAUUGCGAACAAGUUUUUUAACACGAUGUCGGACAACCUCCGCGCCUU
-------------------.(((((.....(((((.(((.....))).)))))...((..((((((((((((..((......))...)))).))))))))(((.....)))))))))) ( -36.20)
>DroAna_CAF1 107062 112 - 1
CAAAGACCCUGGCA------AAGGCAAACCUUGGCAGACAUUCAGUCAGCCUGCCGGCAGGACAUCAUUUAAUUGCGAACAAGUUUUUUAACACGAUGUCGGACAACCUCCGAGUCUU
..(((((.((((((------((((....))))(((.(((.....))).)))))))))...((((((..((((..((......))...))))...))))))(((.....)))..))))) ( -33.10)
>DroPer_CAF1 118489 91 - 1
------------------------CAGACCCUGGCAGACAUUCAGUCAGCC--CCGGCAGGACAUCGUUUAAUUGCGAACAAGUUUUUUAACACGAUGUUGGACAACCUUCU-GGCUU
------------------------((((((..(((.(((.....))).)))--..))...((((((((((((..((......))...)))).)))))))).........)))-).... ( -23.80)
>consensus
______________________GGCAAACCCAGGCAGACAUUCAGUCAGCCUGCCGGCAGGACAUCGUUUAAUUGCGAACAAGUUUUUUAACACGAUGUCGGACAACCUCCGCGCCUU
................................(((.(((.....))).)))....(((..((((((((((((..((......))...)))).))))))))(((.....)))..))).. (-23.09 = -23.07 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:23 2006