Locus 2015

Sequence ID 2L_DroMel_CAF1
Location 5,455,239 – 5,455,330
Length 91
Max. P 0.514167
window3243

overview

Window 3

Location 5,455,239 – 5,455,330
Length 91
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 79.90
Mean single sequence MFE -23.15
Consensus MFE -15.34
Energy contribution -14.95
Covariance contribution -0.39
Combinations/Pair 1.12
Mean z-score -1.24
Structure conservation index 0.66
SVM decision value -0.04
SVM RNA-class probability 0.514167
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5455239 91 - 22407834
UGGACGUGCGUGCAUUUA-ACUGCCGCCAGAAGCCAGAGUUUAAAUGGCUUCGUUGCAUUUAGCUUCGUUAUCGAAUUGUAAUGAA--UUCAUA
..((((.(((.(((....-..))))))).(((((((.........))))))))))((.....))((((((((......))))))))--...... ( -24.50)
>DroPse_CAF1 89314 87 - 1
U--GGUUGCGUGCC-----ACUGGAGACAGAAGCCAGCGGCUAAAUGGCUUCGUUGCAUUUAGUUUCGUUUUCGAUACUUAAUGAAUAUUCACA
.--....(((.(((-----((((....))).((((...))))...))))..)))..((((.(((.(((....))).))).)))).......... ( -24.30)
>DroEre_CAF1 75717 91 - 1
CGGACCUGCGUGCAUUUAAACGGCCGCCAGAAGCCAGAGU-UAAAUGGCUUCGUUGCAUUUAGCUUCGUUAUCGAAUUGUAAUGAA--UUCAUA
((((.(((.(((((.......((...)).(((((((....-....)))))))..))))).))).)))).....(((((......))--)))... ( -24.60)
>DroYak_CAF1 82323 92 - 1
GGGACUUGCGUGCAUUUAAACAGCCGCCAGAAGCCAGAGUUUAAAUGGCUUCGUUGCAUUUAGCUUCGUUAUCGAAUUGUAAUGAA--UUCAUA
(.(((..(((.((.........)))))..(((((((.........)))))))))).).......((((((((......))))))))--...... ( -23.00)
>DroAna_CAF1 78937 87 - 1
UAAGCUUGCGUGCA-----ACUAUCGACAGAAGCCGGAGACUAAAUGGCUUCACUGCAUUUAGCUUCGUUUUCGAUAUUUAAUGAA--UUCACA
...((......)).-----..((((((...((((.((((.(((((((.(......)))))))))))))))))))))).........--...... ( -19.20)
>DroPer_CAF1 89998 87 - 1
C--GGUUGCGUGCC-----ACUGGAGACAGAAGCCAGCGGGUAAAUGGCUUCGUUGCAUUUAGUUUCGUUUUCGAUACUUAAUGAAUAUUCACA
.--(((.....)))-----..((....))(((((((.........)))))))(((.((((.(((.(((....))).))).)))))))....... ( -23.30)
>consensus
UGGACUUGCGUGCA_____ACUGCCGACAGAAGCCAGAGUCUAAAUGGCUUCGUUGCAUUUAGCUUCGUUAUCGAAAUGUAAUGAA__UUCACA
.........(((.................(((((((.........)))))))....((((.....(((....))).....))))......))). (-15.34 = -14.95 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:09 2006