| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,450,255 – 5,450,346 |
| Length | 91 |
| Max. P | 0.506507 |
| Location | 5,450,255 – 5,450,346 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 80.29 |
| Mean single sequence MFE | -20.16 |
| Consensus MFE | -11.46 |
| Energy contribution | -11.62 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.57 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.506507 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5450255 91 - 22407834 GAUCCAC-AACGCAGACAAGCCCAAAGCGUCAAGUUGUGAAGCUGUGUGCAAAAAAUCAUUAACACGCACACACCCCCACAUACACAGAU-GU---- .((((((-(((...(((..((.....)))))..))))))....(((((((................)))))))..............)))-..---- ( -19.49) >DroSim_CAF1 80812 91 - 1 GAUCCAC-AACGCAGACAAGCCCAAAGCGUCAAGUUGUGAAGCUGUGUGCAAAAAAUCAUUAACACGCACACACCCACACAUACACAGAU-GU---- .((((((-(((...(((..((.....)))))..))))))....(((((((................)))))))..............)))-..---- ( -19.49) >DroEre_CAF1 70729 91 - 1 GAUCCAC-AGCGCAGACAAGCCCAAAGCGUCAAGAUGUGAAGCUGUGUGCAAAAAAUCAUUAACACGCACACGCCCACACAUACAUAACU-GC---- .......-...((((....((.....))......(((((..((.((((((................))))))))...)))))......))-))---- ( -19.89) >DroYak_CAF1 77131 91 - 1 GAUCCAC-AGCGCAGACAAGCCCGAAGCGUCAAGUUGUGAAGCUGUGUGCAAAAAAUCAUUAACACGCACACGCCCACACACACAUAAAU-GU---- ....(((-(((...(((..((.....)))))..))))))..((.((((((................))))))))................-..---- ( -19.79) >DroMoj_CAF1 112912 88 - 1 GAUCCAGGGGCAGAGACUGAACCGACGCGUCAAGUUGUGAAGCUGUGUGCAAAAAAUCAUUAACACGCACACCCAC--AACGCCAACACG------- ........(((...(((((......)).)))..((((((.....((((((................)))))).)))--))))))......------- ( -21.59) >DroAna_CAF1 73851 91 - 1 -----GC-GAUGCAGAGAAGCCCGAAGCGUCAAGUUGUGAAGCUGUGUGCAAAAAAUCAUUAACACGCACACAAACACACACUCGCACACUGAGAAC -----((-(((((...(.....)...))))).(((((((....(((((((................)))))))..)))).))).))........... ( -20.69) >consensus GAUCCAC_AACGCAGACAAGCCCAAAGCGUCAAGUUGUGAAGCUGUGUGCAAAAAAUCAUUAACACGCACACACCCACACAUACACAAAU_GU____ .........................(((.(((.....))).)))((((((................))))))......................... (-11.46 = -11.62 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:04 2006