Locus 2004

Sequence ID 2L_DroMel_CAF1
Location 5,434,137 – 5,434,240
Length 103
Max. P 0.773463
window3227

overview

Window 7

Location 5,434,137 – 5,434,240
Length 103
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 95.99
Mean single sequence MFE -36.37
Consensus MFE -32.26
Energy contribution -33.48
Covariance contribution 1.22
Combinations/Pair 1.03
Mean z-score -1.41
Structure conservation index 0.89
SVM decision value 0.54
SVM RNA-class probability 0.773463
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5434137 103 + 22407834
CGACUAUGAAGUGACAAAAGGUCGCGCUUGGUCAGCGCCAGCGGUUCGGUGUCAUUCAGCCAAUCGAUCGAUCGGCAUUAUCGACCCGCGGCGAACUGUGCUA
.(((((....(((((.....)))))...)))))..((((.((((.((((((.......(((.(((....))).)))..)))))).)))))))).......... ( -38.70)
>DroSec_CAF1 53751 103 + 1
CGACUAUGAAGUGACAAAAGGUCGCGCUUGGUCAGCGCCAGCGGUUCGGUGUCAUUCAGCCAAUCGAUCGAUCCGCAUUAUCGACCCGCUGCGAACUGUGCUA
.(((((....(((((.....)))))...)))))(((((((((((.((((((.......((..(((....)))..))..)))))).))))))......))))). ( -35.40)
>DroSim_CAF1 64700 103 + 1
CGACUAUGAAGUGACAAAAGGUCGCGCUUGGUCAGCGCCAGCGGUUCGGUGUCAUUCAGCCAAUCGAUCGAUCGGCAUUAUCGACCCGCUGCGAACUGUGCUA
.(((((....(((((.....)))))...)))))(((((((((((.((((((.......(((.(((....))).)))..)))))).))))))......))))). ( -39.40)
>DroEre_CAF1 54675 103 + 1
CGUCUAUGAAGUGACAAAAGGUCGCGCUUGGUCAGCGCCAGCGGUCCGGUGUCAUUCAGCCAAUCGAUCGAUCGGCAUUAUCGACCCGCUGCGAACUGUGCUA
.(.(((....(((((.....)))))...))).)(((((((((((..(((((.......(((.(((....))).)))..)))))..))))))......))))). ( -34.20)
>DroYak_CAF1 60756 102 + 1
CGUCUAUGAAGUGACAAAAGGUCGCGCUUGGUCAGCGCCAGCGGUGCGGUGUCAUUCAGCCAAUCGAUCGAUCGGCAU-AUCGACCCGCUGCGAACUGUGCUA
.(.(((....(((((.....)))))...))).)(((((((((((..((((((......(((.(((....))).)))))-))))..))))))......))))). ( -35.70)
>DroAna_CAF1 58478 101 + 1
AGACUAUGAAGUGACAAAAGGUCGCGCUUGGUCAGCGCCAG--GUUCGGUGUCAUUCAGUCAAUCGAUUGAUCGACAUUAUCGACCCGCUGCGAACUGUGCUA
.(((((....(((((.....)))))...)))))(((((..(--((((((((((..((((((....))))))..))))).............))))))))))). ( -34.81)
>consensus
CGACUAUGAAGUGACAAAAGGUCGCGCUUGGUCAGCGCCAGCGGUUCGGUGUCAUUCAGCCAAUCGAUCGAUCGGCAUUAUCGACCCGCUGCGAACUGUGCUA
.(((((....(((((.....)))))...)))))(((((((((((.((((((.......(((.(((....))).)))..)))))).))))))......))))). (-32.26 = -33.48 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:54 2006