| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,429,810 – 5,429,914 |
| Length | 104 |
| Max. P | 0.960977 |
| Location | 5,429,810 – 5,429,914 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 82.70 |
| Mean single sequence MFE | -13.13 |
| Consensus MFE | -13.37 |
| Energy contribution | -13.70 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.11 |
| Structure conservation index | 1.02 |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.960977 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5429810 104 + 22407834 GAUGCCAUGCCAUAUUCCAUAUACCAUAUACCAUAUACCAUAUACCAUAUACCCUCCCAUCCAGUCUGAACUGAUCCGAUCCGAUCCGAUCCGAUCCGCAGGGG ...................................................((((.(.....(((....)))((((.((((......)))).)))).).)))). ( -13.00) >DroSec_CAF1 49518 81 + 1 GAUCCCAUGCCAUAUUCCAUAUACC------------------ACCAUAUACCCUCCCAGCCAGUCUGAACUGAUCCGAUCC-----GAUCCGAUCCGCAGGGG ...(((.(((...............------------------..................((((....))))....((((.-----.....)))).)))))). ( -13.20) >DroSim_CAF1 60468 81 + 1 GAUCCCAUGCCAUAUUCCAUAUACC------------------ACCAUAUACCCUCCCAGCCAGUCUGAACUGAUCCGAUCC-----GAUCCGAUCCGCAGGGG ...(((.(((...............------------------..................((((....))))....((((.-----.....)))).)))))). ( -13.20) >consensus GAUCCCAUGCCAUAUUCCAUAUACC__________________ACCAUAUACCCUCCCAGCCAGUCUGAACUGAUCCGAUCC_____GAUCCGAUCCGCAGGGG ..((((.(((....................................................(((....)))((((.((((......)))).)))).))))))) (-13.37 = -13.70 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:53 2006