Locus 20

Sequence ID 2L_DroMel_CAF1
Location 81,304 – 81,396
Length 92
Max. P 0.985753
window32

overview

Window 2

Location 81,304 – 81,396
Length 92
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 88.91
Mean single sequence MFE -26.58
Consensus MFE -22.48
Energy contribution -21.90
Covariance contribution -0.58
Combinations/Pair 1.14
Mean z-score -3.24
Structure conservation index 0.85
SVM decision value 2.02
SVM RNA-class probability 0.985753
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 81304 92 - 22407834
UUAAAGUCGUCUAAAAAUACCACAAACAAUUGUAGUUGCAGCUUUAAGUUAUAGCAGACGACAAAUAUUGUCGCACCUGUCACAGGUGUGGC-
.....(((((((.........((((....)))).((((.(((.....))).))))))))))).......((((((((((...))))))))))- ( -29.40)
>DroPse_CAF1 71642 93 - 1
UAAAUAUCGUCUAAAAAUACCAAUUCCAACUGUAGUUGCUGUUUUAACCCAUAGCAGACGUCAAAUAUUGUCGCACCUGUCGCAGGUGUGGCC
..((((((((((...............(((....)))(((((........))))))))))....)))))((((((((((...)))))))))). ( -24.40)
>DroSim_CAF1 56237 92 - 1
UUAAAGUCGUCUAAAAAUACCACAUACAAUUGUAGUUGCAGCUUUAAGUUAUAGCAGACGACAAAUAUUGUCGCACCUGUCACAGGUGUGGC-
.....(((((((.........(((......))).((((.(((.....))).))))))))))).......((((((((((...))))))))))- ( -29.50)
>DroEre_CAF1 60674 92 - 1
UUAAAGUCGUCUAAAAAUACCACAUACAAUUGUAGUUGCAGCUUUAAGUUAUAGCAGACGACAAAUAUUGUCGCACCUGUCACAGGUGUGGC-
.....(((((((.........(((......))).((((.(((.....))).))))))))))).......((((((((((...))))))))))- ( -29.50)
>DroYak_CAF1 54016 91 - 1
UUA-AGCCGUCUAAAAAUACCACACACAAUUGUAGUUGCAGCUUUAAGUUAUAGCAGACGACAAAUAUUGUCGCACCUGUCACAGGUGUGGC-
...-.(((((((.........(((......))).((((.(((.....))).))))))))((((.....))))(((((((...))))))))))- ( -23.80)
>DroPer_CAF1 72650 92 - 1
UAAAUAUUGUCUAA-AAUACCCAUUCCAACUGUAGUUGCUGUUUUAACCCAUAGCAGACGUCAAAUAUUGUCGCACCUGUCGCAGGUGUGGCC
........((((..-............(((....)))(((((........)))))))))..........((((((((((...)))))))))). ( -22.90)
>consensus
UUAAAGUCGUCUAAAAAUACCACAUACAAUUGUAGUUGCAGCUUUAAGUUAUAGCAGACGACAAAUAUUGUCGCACCUGUCACAGGUGUGGC_
.......(((((..............((((....))))..(((.........)))))))).........((((((((((...)))))))))). (-22.48 = -21.90 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:26 2006