Locus 1998

Sequence ID 2L_DroMel_CAF1
Location 5,415,200 – 5,415,299
Length 99
Max. P 0.860587
window3220

overview

Window 0

Location 5,415,200 – 5,415,299
Length 99
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 79.07
Mean single sequence MFE -25.13
Consensus MFE -16.76
Energy contribution -17.24
Covariance contribution 0.48
Combinations/Pair 1.10
Mean z-score -1.90
Structure conservation index 0.67
SVM decision value 0.83
SVM RNA-class probability 0.860587
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5415200 99 + 22407834
CUUCCCCAACCGAAACUUAAUAGAGUGGCAAUGGCUUUAAAAGAGCAAACUCUGUCAUUGUUUCGACUGAUUAGAGGCACGAAUUCAAAAGAAUCAUUU---------------
((((..((..((((((...(((((((.......((((.....))))..)))))))....))))))..))....))))...((.(((....)))))....--------------- ( -19.50)
>DroSec_CAF1 35092 96 + 1
CUUCCUCAACCGAAACUUAAUAGAGUGGCAAUGGCUUUUAAAGAGCAAACUCUGUCAUUGUUUUGGCUGAUUAGAGGCACGCAUUCAAAAUAAUCG------------------
((((.(((.(((((((...(((((((.......((((.....))))..)))))))....))))))).)))...))))...................------------------ ( -22.40)
>DroSim_CAF1 34984 96 + 1
CUUCCCCAACGGAAACUUAAUAAAGUGGCAAUGGCUUUUAAAGAACAAACUCUGUCAUUGUUUCGGCUGAUUGGAGGCAGGCAUUGUAAAGAAUGG------------------
((.(((((((((..((((....))))(((((((((..................)))))))))....))).)))).)).)).((((......)))).------------------ ( -19.37)
>DroEre_CAF1 33498 114 + 1
CUGCCCCAGCCGAAACUUAAUAGAGUGGCAAUGGCUCUUAAAGAGCAAACUCUGUCAUUGUUUCGGUUGAUUAAAGCCGAGAAGGCAAAAAAAUGCAUUAAUCAAUUCAAUAUU
.(((..((((((((((...(((((((.......((((.....))))..)))))))....))))))))))......(((.....)))........)))................. ( -34.90)
>DroYak_CAF1 41200 110 + 1
CUUCCCCAACCGAAACUUAAUAGAGUGGCAAUGGCUUUUAAAGAGCUAACUCUGUCAUUGUUUCGGCUGAUUAGAGCCACGAAAUCAAAAGAAUUCAUUAAAGAAUUCUA----
.(((.......(((((...(((((((.....((((((.....)))))))))))))....)))))((((......))))..)))......(((((((......))))))).---- ( -29.50)
>consensus
CUUCCCCAACCGAAACUUAAUAGAGUGGCAAUGGCUUUUAAAGAGCAAACUCUGUCAUUGUUUCGGCUGAUUAGAGGCACGAAUUCAAAAGAAUCC_UU_______________
......((.(((((((...(((((((.......((((.....))))..)))))))....))))))).))............................................. (-16.76 = -17.24 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:48 2006