Locus 1994

Sequence ID 2L_DroMel_CAF1
Location 5,410,190 – 5,410,301
Length 111
Max. P 0.798559
window3214

overview

Window 4

Location 5,410,190 – 5,410,301
Length 111
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 78.01
Mean single sequence MFE -38.19
Consensus MFE -16.84
Energy contribution -16.65
Covariance contribution -0.19
Combinations/Pair 1.24
Mean z-score -2.40
Structure conservation index 0.44
SVM decision value 0.61
SVM RNA-class probability 0.798559
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5410190 111 - 22407834
UUUCGUAUGUGCUGGCAAUUCGCGGCACUUCUUGG-CCGCUUUUCACGGUUUCCUUCUGAUGAGUGCCACGCAUGCGCAU-UUGCAUGUGGCAGCAACAUUUUCACAGC--UGCC
....(((((((.(((((....(((((.(.....))-))))..(((((((.......))).))))))))))))))))((..-..))....((((((............))--)))) ( -41.30)
>DroPse_CAF1 36376 115 - 1
UCCCGAAUCUGUUGGCAAUUUGAUGCAGUUCUUGUGGCGCAUUUCAUGGCUCCGUUCUGAGGGGAGCUGCGCAUGCGCUUGUUGCAUGUUGUGGCAACAUUUUCAUGGAAUUGCA
...(((((.((....))))))).((((((((....(((((((..(..((((((.(.....).))))))..).))))))).....((((..(((....)))...)))))))))))) ( -39.00)
>DroEre_CAF1 28411 110 - 1
UUUCGUAUGUGCUGGCAAUUUGCGGCACUUC-UGG-CCGCUUUUCACGGCUGCUUUCUGAUGAGUGCCACGCAUGCGCAU-UUGCAUGUGGCAGCAACAUUUUCACAGC--UGCC
....(((((((.(((((....(((((.(...-.))-))))..(((((((.......))).))))))))))))))))((..-..))....((((((............))--)))) ( -40.00)
>DroYak_CAF1 35964 111 - 1
UUUCGUAUGUGUUGGCAAUUUGCGGCACUUCUUGG-CCGCUUUUCACGGUUUCUUUCUGAUGAGAGCCACGCAUGCGCAU-UUGCAUGUGGCAGCAACAUUUUCACAGC--UGCC
....((((((((.(((.....(((((.(.....))-)))).((((((((.......))).))))))))))))))))((..-..))....((((((............))--)))) ( -41.80)
>DroAna_CAF1 33294 107 - 1
ACUGAAAUGUGUUGCAUAUUUGAGGCAGUUCCUGU-UUGCUUUUCACGGUUUCGUUCUGAUGAGAGCCACGCAUGCGCAU-UUGCAUGUGAAGCCCACAUUUUCCAUGC------
...((((((((..........(((((((.......-)))))))....(((((((((((....)))))...(((((((...-.)))))))))))))))))))))......------ ( -31.20)
>DroPer_CAF1 36046 115 - 1
GCCCGAAUCUGUUGGCAAUUUGAUGCAGUUCUUGUCGCGCAUUUCAUGGCUCCGUUCUGAUGGGAGCUGCGCAUGCGCUUGUUGCAUGUUGUGGCAACAUUUUCAUGGAAUUUCA
.((.(((..(((((.((.......((((((((..(((.((.............))..)))..))))))))(((((((.....)))))))..)).)))))..)))..))....... ( -35.82)
>consensus
UCUCGAAUGUGUUGGCAAUUUGAGGCACUUCUUGG_CCGCUUUUCACGGCUUCGUUCUGAUGAGAGCCACGCAUGCGCAU_UUGCAUGUGGCAGCAACAUUUUCACAGC__UGCC
........(((((..........)))))..........((.......((((((........))).))).((((((((.....))))))))...)).................... (-16.84 = -16.65 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:42 2006