Locus 1993

Sequence ID 2L_DroMel_CAF1
Location 5,404,829 – 5,404,934
Length 105
Max. P 0.695366
window3213

overview

Window 3

Location 5,404,829 – 5,404,934
Length 105
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 92.76
Mean single sequence MFE -34.28
Consensus MFE -28.82
Energy contribution -28.94
Covariance contribution 0.12
Combinations/Pair 1.07
Mean z-score -1.38
Structure conservation index 0.84
SVM decision value 0.34
SVM RNA-class probability 0.695366
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5404829 105 - 22407834
ACGGCGAAGGCGUUUGCUGCGGUUUCGUAUUCGCCGGCUGAUUGCUCAAAAGCAUUUUCGGGCCGAGACCAAUUGGUAAUGCUGCUGCACGGAUUUUAGCCAAUU
..((((((.(((...((....))..))).))))))((((((.((((....))))..((((.(((((......)))))..(((....)))))))..)))))).... ( -35.70)
>DroSec_CAF1 25111 105 - 1
ACGGCGAAGGCGUUUGCUGCGGUUUCGUAUUCGCGGGCUGAUUGCUCAAAAGCAUUUUCAGGCCUAUACCUAUUGAUAAUGCUCCUGCACGGAUUUUAGCCAAUU
..(((((((.(((.....))).))))..(((((.((.((((.((((....))))...)))).))...............(((....))))))))....))).... ( -30.60)
>DroSim_CAF1 24355 105 - 1
ACGGCGAAGGCGUUUGCUGCGGUUUCGUAUUCGCCGGCUGAUUGCUCAAAAGCAUUUUCAGGCCUAUACCUAUUGGUAAUGCUCCUGCACGGAUUUUAGCCAAUU
..((((((.(((...((....))..))).))))))((((((.((((....))))....((((..((((((....))).)))..))))........)))))).... ( -33.90)
>DroEre_CAF1 23110 104 - 1
ACGGCGAAGGCGUUUGCUGCGGUUUCGUGUUCGCCGGCUGGUUGCUCAAAAGCAUUUUCGGGCCGAGACCUAUUGGUAUUACUCCUGCACGGAU-UUAGCCAAUU
..((((((.(((...((....))..))).))))))((((((.((((....))))..((((.((.((((((....)))....)))..)).)))).-)))))).... ( -35.90)
>DroYak_CAF1 30544 104 - 1
ACGGCGAAGGCGUUUGCUGCGGUUUCGUAUUCGCCGGCUGGUUGCUCAAAAGCAUUUUCGGGCCGCAACUUAUUGGUAUUACUCCUGCACGGAU-GUAGCCAAUU
..((((((.(((...((....))..))).))))))((((.(.((((....))))....).)))).......((((((..((((((.....))).-))))))))). ( -35.30)
>consensus
ACGGCGAAGGCGUUUGCUGCGGUUUCGUAUUCGCCGGCUGAUUGCUCAAAAGCAUUUUCGGGCCGAGACCUAUUGGUAAUGCUCCUGCACGGAUUUUAGCCAAUU
..((((((.(((...((....))..))).))))))((((((.((((....))))...))).))).......((((((.....(((.....))).....)))))). (-28.82 = -28.94 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:41 2006