| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,399,540 – 5,399,630 |
| Length | 90 |
| Max. P | 0.750688 |
| Location | 5,399,540 – 5,399,630 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 70.34 |
| Mean single sequence MFE | -20.51 |
| Consensus MFE | -9.95 |
| Energy contribution | -10.45 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.750688 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5399540 90 + 22407834 GUUCUACCCACCUCGGAAUCUUCUCGUUCUCGCUUUCUUC---CCCUACC-------CAG--AGAAUACAGCAGCCAGUCGGGCUCUUCAGCUGUGUUCUUC ..............((((......((....)).....)))---)......-------..(--((((((((((((((.....)))).....))))))))))). ( -21.10) >DroSec_CAF1 19951 73 + 1 GUUCUUCCCACCUCGGAAUCU-----------------UC---CCCUGCC-------CAG--AGAAUACAGCAGCCAGUCGGGCUCUUCAGCUGUGUUCUUC ....((((......))))...-----------------..---.......-------..(--((((((((((((((.....)))).....))))))))))). ( -21.20) >DroSim_CAF1 18877 73 + 1 GUUCUUCCCACCUCGGAAUCU-----------------UC---CCCUACC-------CAG--AGAAUACAGCAGCCAGUCGGGCUCUUCAGCUGUGUUCUUC ....((((......))))...-----------------..---.......-------..(--((((((((((((((.....)))).....))))))))))). ( -21.20) >DroEre_CAF1 17902 71 + 1 GCUCUUCCCACCUCGGAUUCUUCCC---------------------CGCC-------CAG---GAAUACAGCAGCCAGUCGGGCUCUUCAGCUGCGUUCUUC ..............(((....))).---------------------....-------.((---(((..((((((((.....)))).....))))..))))). ( -16.40) >DroYak_CAF1 24897 93 + 1 GUUCUUCCCACCUCGGAAUCUUCUCGUUCUCGCUUUCUUCUUCAGCUGCC-------CAG--GGAAUACGGCAGCCAGUCGGGCGCUUCAGCUGCGUUCUUC ....((((......))))..........................((((((-------...--.......)))))).....((((((.......))))))... ( -19.90) >DroAna_CAF1 22733 88 + 1 GCUUUGCCCACCUCUGGUUUUAAUUUUU-----UUUCAUG---CCCCACCUCUGUGGCAGCCAGAACACGGCAGCCAGU------CUUCUGCCUGGUUCUUC ....((((....((((((..........-----.....((---((.((....)).))))))))))....))))(((((.------(....).)))))..... ( -23.26) >consensus GUUCUUCCCACCUCGGAAUCUUCUC_____________UC___CCCUACC_______CAG__AGAAUACAGCAGCCAGUCGGGCUCUUCAGCUGUGUUCUUC ...............................................................((((.((((((((.....)))).....)))).))))... ( -9.95 = -10.45 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:40 2006