| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,398,562 – 5,398,658 |
| Length | 96 |
| Max. P | 0.599140 |
| Location | 5,398,562 – 5,398,658 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 85.29 |
| Mean single sequence MFE | -27.63 |
| Consensus MFE | -19.97 |
| Energy contribution | -21.53 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.599140 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5398562 96 - 22407834 CAGGCGUCGCAAAUUGCUGUCAAUGCACAGUGGGCGGGAUGGCAAGAAUUGCAAGCAAAAUUUUUGUUUAUUUCCAAAUAAAUAACUAA---------------ACUUUGU ........((((.((((((((..(((.......))).))))))))...))))..(((((.((((((((((((....)))))))))..))---------------).))))) ( -20.80) >DroSec_CAF1 18986 111 - 1 CAGGCGUCGCAAAUUGCUGUCACUGCACAGUGGGCGGGAUGGCAAGAAUUGCAAGCAAAAUGUUUGGUUAUUACCAAAUUAAUAACUAAAAAUUAACAGAGAGAACUUUGU ...((...((((.((((((((.((((.......))))))))))))...))))..))..(((.(((((((((((......))))))))))).))).((((((....)))))) ( -33.00) >DroSim_CAF1 17904 111 - 1 CAGGCGUCGCAAAUUGCUGUCACUGCACAGUGGGUGGGAUGGCAAGAAUAGCAAGCAAAAUGUUUGGCUAUUCCCAAAUAAAUAACUAAACAUGAACAGAGAGAACUUUGU ..(.((((.((..(..((((......))))..).)).)))).)..(((((((((((.....)))).)))))))......................((((((....)))))) ( -29.10) >consensus CAGGCGUCGCAAAUUGCUGUCACUGCACAGUGGGCGGGAUGGCAAGAAUUGCAAGCAAAAUGUUUGGUUAUUACCAAAUAAAUAACUAAA_AU_AACAGAGAGAACUUUGU ...((...((((.((((((((.((((.......))))))))))))...))))..))......(((((((((((......)))))))))))..................... (-19.97 = -21.53 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:39 2006