Locus 1989

Sequence ID 2L_DroMel_CAF1
Location 5,386,704 – 5,386,795
Length 91
Max. P 0.820393
window3208

overview

Window 8

Location 5,386,704 – 5,386,795
Length 91
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 80.86
Mean single sequence MFE -36.27
Consensus MFE -21.70
Energy contribution -22.62
Covariance contribution 0.92
Combinations/Pair 1.30
Mean z-score -2.31
Structure conservation index 0.60
SVM decision value 0.68
SVM RNA-class probability 0.820393
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5386704 91 - 22407834
CAACUC--CAGAUGAGCCAUUCCCGAUAAGUUCUUCAGGGGGCUGGCCACACUGGCCCAGGGAUUCGG-------------CCAGGCCAGACUUGGCUCAUCUCUG
......--.(((((((((((((((((........)).)))))((((((....(((((.........))-------------)))))))))...))))))))))... ( -40.00)
>DroSec_CAF1 7135 91 - 1
CAACUC--CAGAUGAGCCAUUCCCGAUAAGUUCUUCAGGGGGCUGGCCACACUGGCCCAGGGAUUCGG-------------CCAGGCCAGACUUGGCUCAUCUCUG
......--.(((((((((((((((((........)).)))))((((((....(((((.........))-------------)))))))))...))))))))))... ( -40.00)
>DroSim_CAF1 6130 91 - 1
CAACUC--CAGAUGAGCCAUUCCCGAUAAGUUCUUCAGGGGGCUGGCCACACUGGCCCAGGGAUUCGU-------------CCAGGCCAGACUUGGCUCAUCUCUG
......--.(((((((((((((((((........)).)))))((((((...(((...)))(((....)-------------)).))))))...))))))))))... ( -37.50)
>DroEre_CAF1 4532 103 - 1
CGACUC--CAGAUGUGGCAUUCCCGAUAAGUUCUUCAG-GGGCUGGCCACACUGGCCCAGGGAUUCGGCUUUUGGCCCAGACCAGGCCGGACUCGGCUCAUCUCUG
.....(--(((.((((((..((((((........)).)-)))...))))))))))..(((((((..(((((((((((.......)))))))...)))).))))))) ( -42.10)
>DroYak_CAF1 11699 88 - 1
CGACUCCCCAGAUGUGCCAUUCCCGAUAAGUUCCUCUGGGGGCUGGCCACACUGGCCCAAGGAUUCGG------------------CCAGACUUGGCUCAUCUCUG
.........(((((.((((.((((((.....((((....((((..(.....)..)))).)))).))))------------------...))..)))).)))))... ( -31.80)
>DroAna_CAF1 8304 80 - 1
CCACUC--CAGAUGGAGCAUCUUUGAUAAGGUCUUCAGGGGGCUGGCCACACUGGCCCACGGAUUUGG-------------CA---CAGGACUUGGUC--------
((((((--(...(((((.(((((....)))))))))).))))(((((((..(((.....)))...)))-------------).---)))....)))..-------- ( -26.20)
>consensus
CAACUC__CAGAUGAGCCAUUCCCGAUAAGUUCUUCAGGGGGCUGGCCACACUGGCCCAGGGAUUCGG_____________CCAGGCCAGACUUGGCUCAUCUCUG
.........((((((((((...((((.....((((....((((..(.....)..)))).)))).)))).........................))))))))))... (-21.70 = -22.62 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:36 2006