| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,377,107 – 5,377,226 |
| Length | 119 |
| Max. P | 0.520985 |
| Location | 5,377,107 – 5,377,226 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.67 |
| Mean single sequence MFE | -33.08 |
| Consensus MFE | -22.24 |
| Energy contribution | -24.18 |
| Covariance contribution | 1.94 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.67 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.520985 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5377107 119 - 22407834 AAUGACACAGACCACGCCCCCUCCGAAGAUGAGGGCAAGUGCAGGAAGGCGUAAAGUAAAAAAGUGUGAAAAACCACACACACUCGAUCAA-CCAGCCAUCCAUCAGGGGUUUUUUGUGU ....(((((((..((.(((((((.......)))))........(((.(((.............(((((......)))))......(.....-.).))).)))....)).))..))))))) ( -33.40) >DroSec_CAF1 34469 120 - 1 AAUGACACAGGCCACGCCCCCUCCGAAGAUGAGCGCAAGUGCAGGAAGGCGUGAAGUAAAAAAGUGUGAAAAACCACACACACUCGAUCAAAGCAGCCAUCCAUCAGGGGUUUUUUGUGU ....(((((((....(((((.........((.((....)).))(((.(((.((.........((((((..........)))))).........))))).)))....)))))..))))))) ( -33.87) >DroSim_CAF1 35026 119 - 1 AAUGACACAGACCACGCCCCCUCCGAAGAUGAGCGCAAGUGCAGGAAGGCGUGAAGUAAAAAAGUGUGAAAAACCACACACACUCGAUCAA-CCAGCCAUCCAUCAGGGGUUUUUUGUGU ....(((((((....(((((.........((.((....)).))(((.(((.(((.........(((((......)))))........))).-...))).)))....)))))..))))))) ( -34.83) >DroEre_CAF1 37662 119 - 1 AAUGACACAGACCACGCCCCCUCCGAAGACGAGGGCAAGUGCAGGGAGGCGUGAAGUAAAAAAGUGUGAAAAACCACACACACUCGAUCAA-CCAGCCAUCCAUCAGGGGUUUUUUGUGU ....(((((((.((((((((((((........))((....)))))).))))))..........(((((......)))))............-..((((..((....)))))).))))))) ( -35.80) >DroAna_CAF1 41567 94 - 1 --------------------CGCCGGGGAUAAGGGCAAGUGCACGGAGGCGUGAAGUAAAAAAGUGUGAAAAACCACACAGAUCCGA---G-CCAGCCAUCCAUCAGGGAUGUGUGGU-- --------------------.(((.........))).......((((.((.....))......(((((......)))))...)))).---(-(((..(((((.....)))))..))))-- ( -27.50) >consensus AAUGACACAGACCACGCCCCCUCCGAAGAUGAGGGCAAGUGCAGGAAGGCGUGAAGUAAAAAAGUGUGAAAAACCACACACACUCGAUCAA_CCAGCCAUCCAUCAGGGGUUUUUUGUGU ....(((((((....(((((..............((....)).(((.(((.............(((((......)))))......(.......).))).)))....)))))..))))))) (-22.24 = -24.18 + 1.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:32 2006