| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,371,787 – 5,371,900 |
| Length | 113 |
| Max. P | 0.872525 |
| Location | 5,371,787 – 5,371,900 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 79.56 |
| Mean single sequence MFE | -31.18 |
| Consensus MFE | -22.85 |
| Energy contribution | -23.38 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.872525 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5371787 113 + 22407834 UUUUAAUUGUGCCACUGAUGUUGGCCAUAAGUUACAUCGCAAAUGGCCAGCAAUUCUAGAUGUUGCAUCGCAGAUAGGUGCAUCGAUGUUGCACUUUCAACUGGUGGAGAG-AA ......((...(((((..((((((((((..((......))..))))))))))......((((...))))...((.(((((((.......)))))))))....)))))...)-). ( -33.70) >DroSec_CAF1 29278 101 + 1 UUUUAAUUGUGCCACAGAUGUUGGCCAUAAGUUACAUCGCAAAUGGCCAGCAAUUCUAGAUGUUGCAGCGCAGAUAGGUGCAUCGAUGUU------------GGUGGAGAG-AA ......((...(((((((((((((((((..((......))..))))))))))..))).(((((((..((((......))))..)))))))------------.))))...)-). ( -31.50) >DroSim_CAF1 29800 113 + 1 UUUUAAUUGUGCCACUGAUGUUGGCCAUAAGUUACAUCGCAAAUGGCCAGCAAUUCUAGAUGUUGCAACGCAGAUAGGUGCAUCGAUGUUGCACUUUCAACUGGUGGAGAG-AA ......((...(((((..((((((((((..((......))..))))))))))......((...(((((((..(((......)))..)))))))...))....)))))...)-). ( -34.50) >DroEre_CAF1 32298 91 + 1 UUUUAAUUGUGCCACUGAUGUUGGCCAUAAGUUACAUCGCAAAUGGCCAGCAAUUCUAGAUGUUGCAUCGCAGAUAGGUGC-----------------------UGGAAUAAAG ........(..((.....((((((((((..((......))..))))))))))..(((.((((...))))..)))..))..)-----------------------.......... ( -26.30) >DroYak_CAF1 30029 113 + 1 UUUUAAUUGUGCCACUGAUGUUGGCCAUAAGUUACAUCGCAAAUGGCCAGCCAUUCUAGAUGUUGCAACGCAGAUAGGUGCCUCGCUGUGGCACUUCAAAGUGGUGGAGAA-AA ......((.(((((((...(((((((((..((......))..)))))))))....(((..(((......)))..)))(((((.......))))).....))))))).))..-.. ( -35.50) >DroAna_CAF1 35652 111 + 1 UUUUAAUUGUGCCACUGAUGUUGGCCAUAAGUUACAUGGCAAAUGGCUGGUAAUUCUAGAUGCCGCUCUGCAGAUUAUUUUCGAAAACGGGGACUUUAAUAAAGUGGAGUA--- ......(((((((((....).))).))))).......((((.....((((.....)))).))))((((..(..((((((..((....))..))...))))...)..)))).--- ( -25.60) >consensus UUUUAAUUGUGCCACUGAUGUUGGCCAUAAGUUACAUCGCAAAUGGCCAGCAAUUCUAGAUGUUGCAACGCAGAUAGGUGCAUCGAUGUUGCACUUU_AA_UGGUGGAGAA_AA ...........(((((..((((((((((..((......))..))))))))))..((((..(((......)))..))))........................)))))....... (-22.85 = -23.38 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:27 2006