| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 593,598 – 593,712 |
| Length | 114 |
| Max. P | 0.813019 |
| Location | 593,598 – 593,712 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.41 |
| Mean single sequence MFE | -54.63 |
| Consensus MFE | -40.19 |
| Energy contribution | -40.28 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.813019 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 593598 114 - 22407834 CGCAGCCGCCAGUCCCAUCCGACCGCAGAGGGUUCCUGCCAUGCUGCAGCAUCCUGGCCUGCA---UCUGGGUCACUUGGCGGCUGCAGCGGCGAGCGGUUUUGCCG---CCUCUCCCUC .(((((((((((.((((...((..(((((((((..((((......)))).)))))...)))).---))))))....))))))))))).((((((((....)))))))---)......... ( -53.60) >DroVir_CAF1 31198 114 - 1 CGCCGCCGCCAGCCCGAUCCGCCCGCAGCGGGUUCCUGCCAUGUUGCAGCAUCCUGGACUGCA---UCUGGGCCAUCUGGCGGCGGCGGCAGCGAGCGGUUUUGCCG---CCUCCCCCUC .(((((((((.(((.(((..(((((((((((((....))).)))))).(((........))).---...)))).))).))))))))))))...((((((.....)))---.)))...... ( -60.00) >DroGri_CAF1 30474 114 - 1 CGCCGCCGCCAGCCCGAUACGCCCGCAACGUGUUCCUGCCAUGCUGCAGCAUCCCGGCUUGCA---UCUGAGCCAUCUGGCGGCGGCGGCAGCAAGCGGCUUUGCGG---CAUCCCCAUC .(((((((((.(((.(((..((..(((.((((.......)))).))).)).....(((((...---...)))))))).)))))))))))).....((.((...)).)---)......... ( -51.10) >DroWil_CAF1 29861 120 - 1 UGCCGCCGCCAGUCCCAUUAGGCCGCAGCGUGUCCCAGCAAUGCUACAGCAUCCCGGCCUGCACCAUUUGGGUCACCUGGCGGCGGCAGCAGCCAGCGGUUUUGCGGCAGCUUCACCAUC ((((((((((((.((((.(((((((..((........)).((((....))))..))))))).......))))....))))))))))))((.(((.(((....)))))).))......... ( -55.90) >DroMoj_CAF1 29169 114 - 1 CGCCGCAGCCAGUCCGAUUCGACCGCAGCGGGUUCCUGCCAUGCUGCAGCACCCUGGCCUGCA---UCUCGGUCAUCUGGCGGCGGCAGCAGCGAGUGGUUUCGCAG---CCUCCCCAUC .(((((.(((((.((((.......(((((((((....))).)))))).(((........))).---..))))....))))).))))).((.(((((....))))).)---)......... ( -50.10) >DroAna_CAF1 25629 114 - 1 UGCCGCCGCCAGUCCGAUCCGACCGCAGAGGGUUCCUGCCAUGCUGCAGCAUCCCGGCUUGCA---CCUGGGUCACUUGGCGGCGGCAGCGGCCAGCGGAUUCGCGG---CUUCGCCCUC ((((((((((((...((((((...((((.(((...((((......))))...)))...)))).---..))))))..))))))))))))((((((.(((....)))))---)..))).... ( -57.10) >consensus CGCCGCCGCCAGUCCGAUCCGACCGCAGCGGGUUCCUGCCAUGCUGCAGCAUCCCGGCCUGCA___UCUGGGUCACCUGGCGGCGGCAGCAGCGAGCGGUUUUGCGG___CCUCCCCAUC .(((((((((((............(((((((((....))).))))))........(((((.........)))))..)))))))))))....(((((....)))))............... (-40.19 = -40.28 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:01 2006