Locus 1979

Sequence ID 2L_DroMel_CAF1
Location 5,371,341 – 5,371,435
Length 94
Max. P 0.981134
window3198

overview

Window 8

Location 5,371,341 – 5,371,435
Length 94
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 97.23
Mean single sequence MFE -26.35
Consensus MFE -25.08
Energy contribution -25.08
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.43
Structure conservation index 0.95
SVM decision value 1.88
SVM RNA-class probability 0.981134
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5371341 94 - 22407834
UUAGAGGCGCUGAGCGAUGAGCAUGGGAAUUUCAAUUAGACGAAGUGCCCAGGGAGA-------AAUCUUUCCCACAACUUGCCAAUUAUUUUCUGUGAUU
.....((((((.(....).))).((((.(((((........))))).))))((((((-------....)))))).......)))((((((.....)))))) ( -26.50)
>DroSec_CAF1 28831 94 - 1
UUAGAGGCGCUGAGCGAUGAGCAUGGGAAUUUCAAUUAGACGAAGUGCCCAGGGAGA-------AAUCUUUCCCACAACUUGCCAAUUAUUUUCUGUGAUU
.....((((((.(....).))).((((.(((((........))))).))))((((((-------....)))))).......)))((((((.....)))))) ( -26.50)
>DroSim_CAF1 29354 94 - 1
UUAGAGGCGCUGAGCGAUGAGCAUGGGAAUUUCAAUUAGACGAAGUGCCCAGGGAGA-------AAUCUUUCCCACAACUUGCCAAUUAUUUUCUGUGAUU
.....((((((.(....).))).((((.(((((........))))).))))((((((-------....)))))).......)))((((((.....)))))) ( -26.50)
>DroEre_CAF1 31854 101 - 1
UUAGAGGCGCUGAGCGAUGAGCAUGGGAAUUUCAAUUAGACGAAGUGCCCAGGGAGAAAUCAGAAAUCUUUCCCACAACUUGCCAAUUAUUUUCUGUGAUU
.....((((((.(....).))).((((.(((((........))))).))))((((((.((.....)).)))))).......)))((((((.....)))))) ( -25.60)
>DroYak_CAF1 29586 94 - 1
UUAGAGGCGCUGAGCGAUGAGCAUGGGAAUUUCAAUUAGACGAAGUGCCCAGGGAGA-------AAUCUUUCCCACAACUUGCCAAUUAUUUUCUGUGAUU
.....((((((.(....).))).((((.(((((........))))).))))((((((-------....)))))).......)))((((((.....)))))) ( -26.50)
>DroAna_CAF1 35202 94 - 1
UUAGAGGCGCUGAGCGAUGAGCAUGGGAAUUUCAAUUAGACGAAGUGCCCAGGGAGA-------AAUCUUUCCCACCACUUGCCAAUUAUUUUCUGUGAUU
.....((((((.(....).))).((((.(((((........))))).))))((((((-------....)))))).......)))((((((.....)))))) ( -26.50)
>consensus
UUAGAGGCGCUGAGCGAUGAGCAUGGGAAUUUCAAUUAGACGAAGUGCCCAGGGAGA_______AAUCUUUCCCACAACUUGCCAAUUAUUUUCUGUGAUU
.....((((((.(....).))).((((.(((((........))))).))))((((((...........)))))).......)))((((((.....)))))) (-25.08 = -25.08 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:26 2006