| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,358,381 – 5,358,501 |
| Length | 120 |
| Max. P | 0.723733 |
| Location | 5,358,381 – 5,358,501 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.78 |
| Mean single sequence MFE | -51.08 |
| Consensus MFE | -29.90 |
| Energy contribution | -30.90 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.723733 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5358381 120 + 22407834 UUGUGAGAGCUGGUGCCUCCUGCACCGAAGAGAACAAGGCGGGAUUCACCGCCGUUCAUCUGGCGGCACAGAAUGGACAUGGUCAGGUCUUGGAUGUGCUGAAAAGCACAAACUCACUAA ..(((((........((.((((.((((..........(((((......)))))(((((((((......))).)))))).))))))))....)).((((((....))))))..)))))... ( -49.80) >DroVir_CAF1 38843 120 + 1 UGGUGCGUGCCGGCGCCUCCUGCACCGAGGAGAACAAAGCCGGCUUCACGGCUGUGCAUUUGGCCGCCCAGAAUGGGCAUGGCCAGGUGCUGGAUGUGCUCAAGAGCACCAAUUCGCUGC ((((((.....(((((.(((.(((((........((.(((((......))))).))....(((((((((.....))))..)))))))))).))).))))).....))))))......... ( -58.70) >DroGri_CAF1 33029 120 + 1 UGGUCCGUGCCGGUGCCUCCUGCACCGAGGAGAACAAGGCGGGCUUCACAGCCGUCCAUCUGGCUGCCCAGAACGGGCAUGGUCAGGUCCUGGAUGUCCUCAAGAGCACAAACUCACUGA .(((..((((((((((.....)))))(((((......(((.(......).)))((((((((((((((((.....))))..)))))))...))))).)))))..).))))..)))...... ( -48.10) >DroWil_CAF1 36253 120 + 1 UGGUACGUGCCGGAGCCUCGUGUACGGAAGAGAAUAAGGCUGGCUUCACCGCCGUACAUUUGGCUGCCCAAAAUGGGCAUGGUCAAGUGUUGGACGUACUGAAAAGCACCAACUCUCUAA .((((((((((..(((((..(...(....)...)..)))))))).......(((.((((((((((((((.....))))..)))))))))))))))))))).................... ( -44.20) >DroMoj_CAF1 34334 120 + 1 UGGUGCGCGCCGGCGCCUCCUGCACCGAGGAAAACAAGGCCGGCUUCACGGCCGUCCACUUGGCCGCCCAGAACGGGCAUGGCCAAGUCCUGGACGUGCUGAAGAGCACCAACUCGCUGC ((((((.(((((((.((((.......))))........))))))....(((((((((((((((((((((.....))))..))))))))...))))).))))..).))))))......... ( -61.60) >DroAna_CAF1 22082 120 + 1 UGGUCCGGGCCGGGGCAUCCUGUACGGAGGAGAACAAGGCAGGAUUUACGGCCGUCCAUUUGGCGGCCCAAAACGGACACGGACAGGUCCUGGACGUCCUGAAGAGCACCAACUCCCUAA ..((((((((((..(.(((((((..(........)...))))))))..)))))((((.(((((....)))))..)))).)))))(((((..((....)).)).(((......)))))).. ( -44.10) >consensus UGGUGCGUGCCGGCGCCUCCUGCACCGAGGAGAACAAGGCCGGCUUCACGGCCGUCCAUUUGGCCGCCCAGAACGGGCAUGGUCAGGUCCUGGACGUGCUGAAGAGCACCAACUCACUAA ((((.(....(((((((((((......))))).....(((.(......).)))((((((((((((((((.....))))..)))))))...)))))))))))....).))))......... (-29.90 = -30.90 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:22 2006