Locus 1973

Sequence ID 2L_DroMel_CAF1
Location 5,356,150 – 5,356,264
Length 114
Max. P 0.725862
window3189

overview

Window 9

Location 5,356,150 – 5,356,264
Length 114
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 80.06
Mean single sequence MFE -40.05
Consensus MFE -32.72
Energy contribution -32.72
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.32
Structure conservation index 0.82
SVM decision value 0.41
SVM RNA-class probability 0.725862
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5356150 114 + 22407834
CAUGUUAAAUUUUGGAU-U--UAUUUUUUCGCAGGCAACGACGGCCAAUGGAGACACGGCCUUGCAUUUGGCCGCCAGACGGCGGGACGUGGACAUGGUCCGCAUCCUGGUUGAUUA
.................-.--.........((((....)...((((..((....)).)))).)))..(..((((((....)))((((.((((((...)))))).)))))))..)... ( -38.90)
>DroVir_CAF1 36279 114 + 1
---CGUGCAUUCGUGAUUCGUUAUUCGUGAUAAGGCAACGACGGCCAAUGGAGACACGGCCUUGCAUUUGGCCGCCAGACGGCGGGACGUCGAUAUGGUCCGCAUUCUGGUUGAUUA
---.(((..(((((...((((..((.((......))))..))))...)))))..)))((((........))))((((((..((((..(((....)))..))))..))))))...... ( -38.80)
>DroGri_CAF1 30274 101 + 1
---GGU------------CG-AUUUCCCUUUCAGGCAACGACGGCCAAUGGAGACACGGCCUUGCAUUUGGCCGCCAGACGGCGGGACGUCGAUAUGGUCCGCAUCCUGGUCGACUA
---.((------------((-((.((((.....(((..(((.((((..((....)).)))))))......)))(((....))))))).)))))).(((((.((......)).))))) ( -39.50)
>DroSim_CAF1 14477 106 + 1
--------AUUUUGGAU-U--UAUUUUUUCGCAGGCAACGACGGCCAAUGGAGACACGGCCUUGCAUUUGGCCGCCAGACGGCGGGACGUGGACAUGGUCCGCAUCCUGGUCGAUUA
--------.........-.--.........((((....)...((((..((....)).)))).)))..(((((((((....)))((((.((((((...)))))).))))))))))... ( -40.20)
>DroMoj_CAF1 32080 100 + 1
---UUU--------------CUUUUCGAUUUUAGGCAACGACGGCCAAUGGAGACACGGCCUUGCAUUUGGCCGCCAGACGGCGGGACGUCGACAUGGUCCGCAUUCUGGUGGAUUA
---...--------------..............((((....((((..((....)).))))))))......((((((((..((((..(((....)))..))))..)))))))).... ( -37.40)
>DroAna_CAF1 19665 114 + 1
CAUGCUCGUAUUUCGUU-C--CCUUUCCCCCCAGGCAACGACGGCCAAUGGAGACACGGCCUUGCAUUUGGCCGCCAGACGGCGGGACGUGGACAUGGUCCGCAUCCUGGUCGACUA
.((((.......(((((-.--(((........))).))))).((((..((....)).))))..))))(((((((((....)))((((.((((((...)))))).))))))))))... ( -45.50)
>consensus
___GGU__AUUUU_GAU_C__UAUUCCUUCUCAGGCAACGACGGCCAAUGGAGACACGGCCUUGCAUUUGGCCGCCAGACGGCGGGACGUCGACAUGGUCCGCAUCCUGGUCGAUUA
.................................(((..(((.((((..((....)).)))))))......)))(((((...((((..(((....)))..))))...)))))...... (-32.72 = -32.72 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:17 2006