| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,354,717 – 5,354,808 |
| Length | 91 |
| Max. P | 0.991682 |
| Location | 5,354,717 – 5,354,808 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 78.58 |
| Mean single sequence MFE | -20.61 |
| Consensus MFE | -12.06 |
| Energy contribution | -15.25 |
| Covariance contribution | 3.19 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.59 |
| SVM decision value | 2.28 |
| SVM RNA-class probability | 0.991682 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5354717 91 + 22407834 UCGAUUCGUUUCGAUUCGCUUUUCUUUUUUUUUUCUACACGCAUUUCCGGUGUGCAUAUACAUGCAAAUAUAUAUAU-UGUAUGUGUGUGGA .(((.(((...))).)))...............(((((((((((...(((((((.((((........)))).)))))-)).))))))))))) ( -22.70) >DroSec_CAF1 13015 92 + 1 UCGAUUCGUUUCGAUUCGCUUUUCUUUUUUUUUUCUGCACGCAUUUCCGGUGUGCAUGUACAUACACAUGUAUAUAUAUACGUGUGUGUGGA .(((.(((...))).))).................(((((((.......)))))))....(((((((((((((....))))))))))))).. ( -29.80) >DroSim_CAF1 13102 83 + 1 UCGAUUCGUUUCGAUUUGCUUUUCUUUU-UUUUUCUGCACGCAUUUCCGGUGUGCAUAUAU--------AUAUAUAUAUAUGUGUGUGUGGA ((((......))))..............-....((..(((((((.....))))((((((((--------((....)))))))))))))..)) ( -20.60) >DroEre_CAF1 14083 82 + 1 UCGAUUCGUUUCGUUUAGAUUCGCUUUUCUUUUUCUACACGCAUUUCCGGGGUUUAUAUACACACGAACAUAUA----------UCUGUGGA ...........(((.((((..............)))).)))....((((.((..(((((..........)))))----------.)).)))) ( -9.34) >consensus UCGAUUCGUUUCGAUUCGCUUUUCUUUUUUUUUUCUACACGCAUUUCCGGUGUGCAUAUACAUACAAAUAUAUAUAU_UAUGUGUGUGUGGA ((((......))))...................(((((((((((.....(((((.((((((((....)))))))).)))))))))))))))) (-12.06 = -15.25 + 3.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:16 2006