Locus 1971

Sequence ID 2L_DroMel_CAF1
Location 5,347,628 – 5,347,729
Length 101
Max. P 0.963569
window3187

overview

Window 7

Location 5,347,628 – 5,347,729
Length 101
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 86.55
Mean single sequence MFE -24.52
Consensus MFE -19.88
Energy contribution -19.68
Covariance contribution -0.20
Combinations/Pair 1.17
Mean z-score -2.22
Structure conservation index 0.81
SVM decision value 1.55
SVM RNA-class probability 0.963569
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5347628 101 + 22407834
GUUUGGCCAAAAAACAGAGGCUAGC----AAGGAAAAG-CGCCCAAAAAAAAAAAAAACAGAGAACAGC-GAAUGUUAUUUGAUAGCUCGGCCCAAAUGUUUUGGCU
....((((((((......(((((((----..((.....-...))..............((((.((((..-...)))).))))...))).))))......)))))))) ( -25.50)
>DroSec_CAF1 6016 93 + 1
UAUUGGCCAGAAAACAGAGGCUAGC----AAGGAAAAG-CGCCCGAA--------AAACAGAGAACAGC-GAACGUUAUUUGAUAGCGCGGCCCAAAUGUUUUGGCU
....((((((((......((((.((----..((.....-...))...--------...((((.(((...-....))).))))...))..))))......)))))))) ( -22.90)
>DroSim_CAF1 6108 93 + 1
UAUUGGCCAGAAAACAGAGGCUAGC----AAGGAAAAG-CGCCCGAA--------AAACAGAGAACAGC-GAAUGUUAUUUGAUAGCGCGGCCCAAAUGUUUUGGCU
....((((((((......((((.((----..((.....-...))...--------...((((.((((..-...)))).))))...))..))))......)))))))) ( -24.90)
>DroEre_CAF1 6872 94 + 1
UAUUAGCCAGAAAACAGAGGCCAGC----AAGCAAAACAGGCCC--------AAAAAACAGAGAACAGC-GAAUGUUAUUUGAUAGCGCGGCCCAAAUGUUUUGGCU
....((((((((......((((.((----..((.......))..--------......((((.((((..-...)))).))))...))..))))......)))))))) ( -25.70)
>DroYak_CAF1 6135 101 + 1
UAUUAGCCAGAAAACAGAGGCCAGUCAGAAAGCAAAA--AGCCCGAAA----AAAAAACAGAGAACAGCAGAAUGUUAUUUGAUAGCGCGGCCCAAAUGUUUUGGCU
....((((((((......((((.........((....--.))......----......((((.((((......)))).)))).......))))......)))))))) ( -23.60)
>consensus
UAUUGGCCAGAAAACAGAGGCUAGC____AAGGAAAAG_CGCCCGAA_____AAAAAACAGAGAACAGC_GAAUGUUAUUUGAUAGCGCGGCCCAAAUGUUUUGGCU
....((((((((......((((.((......((........))...............((((.((((......)))).))))...))..))))......)))))))) (-19.88 = -19.68 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:15 2006