| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,337,883 – 5,338,004 |
| Length | 121 |
| Max. P | 0.988712 |
| Location | 5,337,883 – 5,337,974 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 89.43 |
| Mean single sequence MFE | -25.68 |
| Consensus MFE | -20.82 |
| Energy contribution | -21.42 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.81 |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.900447 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5337883 91 - 22407834 GGUGACUCGGUGAUUUUUGGUCUGAUUUGCAUAGCUCUGACCGAAAA---AAACAC-GGGUCACUUGAAAUGGCAUUGGAAUAUCUUUGAGAUCU (((((((((((..(((((((((.((...((...)))).)))))))))---..)).)-))))))))......((..(..((.....))..)..)). ( -26.40) >DroSec_CAF1 7720 95 - 1 GGUGACUCGGUGAUUUUUGGUCUGAUUUGCAUAGGUCUGACCGAAAAAAAAAACACUGGGUCACUUGGACUGGCAUUGAAAUAUCUUUGUGAUCU ((((((((((((.(((((((((.((((......)))).)))))))))......)))))))))))).(((.(.(((..((....))..))).)))) ( -32.50) >DroSim_CAF1 7925 93 - 1 GGUGACUCGGUGAUUUUUGGUCUGAUUUGCAUAGGUCUGACCGAAAAA-AAAACAC-GGGUCACUUGGACUGGCAUUGAAAUAUCUUUGUGAUCU (((((((((((..(((((((((.((((......)))).))))))))).-...)).)-)))))))).(((.(.(((..((....))..))).)))) ( -30.90) >DroEre_CAF1 7846 86 - 1 GGUGAUUCGGUGAUUUUCGGUAUGAUUUGCAUAGGUCUGACCGACAA---AAACAC-GGGUCACUU-----GGCAUUGGAAUAUCUUUGUGAUCU (((((((((((..((.(((((..((((......))))..))))).))---..)).)-))))))))(-----.(((..((.....)).))).)... ( -22.50) >DroYak_CAF1 8107 86 - 1 GAUGAUUCGGUGAUUUUUGGUAUGAUUUGCAUAGGUCUGACCGACAA---AAACAC-GGGUUACUU-----GGCAUUGGAAUAUCUUUGUGAUCU ......((((((((((...(((.....)))..)))))..)))))...---......-(((((((..-----((.((......))))..))))))) ( -16.10) >consensus GGUGACUCGGUGAUUUUUGGUCUGAUUUGCAUAGGUCUGACCGAAAA___AAACAC_GGGUCACUUG_A_UGGCAUUGGAAUAUCUUUGUGAUCU ((((((((.(((.(((((((((.((((......)))).)))))))))......))).)))))))).......(((..((....))..)))..... (-20.82 = -21.42 + 0.60)
| Location | 5,337,907 – 5,338,004 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 85.21 |
| Mean single sequence MFE | -25.62 |
| Consensus MFE | -20.42 |
| Energy contribution | -21.06 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.80 |
| SVM decision value | 2.13 |
| SVM RNA-class probability | 0.988712 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5337907 97 - 22407834 UAAUGAAUUUAAUAAAUAAUCCAGCAAAUCGGUGACUCGGUGAUUUUUGGUCUGAUUUGCAUAGCUCUGACCGAAAA---AAACAC-GGGUCACUUGAAAU ............................(((((((((((((..(((((((((.((...((...)))).)))))))))---..)).)-))))))).)))... ( -26.90) >DroSec_CAF1 7744 96 - 1 --AUG-AUUAAAUGA--UAUCCAGCAAAUCGGUGACUCGGUGAUUUUUGGUCUGAUUUGCAUAGGUCUGACCGAAAAAAAAAACACUGGGUCACUUGGACU --...-.........--..((((.......((((((((((((.(((((((((.((((......)))).)))))))))......)))))))))))))))).. ( -31.91) >DroSim_CAF1 7949 99 - 1 UAAUGAAUUAAAUAAAUAAUCCAGCCAAUCGGUGACUCGGUGAUUUUUGGUCUGAUUUGCAUAGGUCUGACCGAAAAA-AAAACAC-GGGUCACUUGGACU ......................(((((...(((((((((((..(((((((((.((((......)))).))))))))).-...)).)-))))))))))).)) ( -30.50) >DroEre_CAF1 7870 92 - 1 UAAUGAAAUUAAUAAAUAAUCCAGCAAAUUGGUGAUUCGGUGAUUUUCGGUAUGAUUUGCAUAGGUCUGACCGACAA---AAACAC-GGGUCACUU----- ..............................(((((((((((..((.(((((..((((......))))..))))).))---..)).)-)))))))).----- ( -21.50) >DroYak_CAF1 8131 92 - 1 UAAUAAAAUUCAUAAAUAAUCCAGCCAAUCGAUGAUUCGGUGAUUUUUGGUAUGAUUUGCAUAGGUCUGACCGACAA---AAACAC-GGGUUACUU----- ................((((((.......(((....)))(((.(((((((((.....)))...((.....))..)))---))))))-))))))...----- ( -17.30) >consensus UAAUGAAUUUAAUAAAUAAUCCAGCAAAUCGGUGACUCGGUGAUUUUUGGUCUGAUUUGCAUAGGUCUGACCGAAAA___AAACAC_GGGUCACUUG_A_U ..............................((((((((.(((.(((((((((.((((......)))).)))))))))......))).))))))))...... (-20.42 = -21.06 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:11 2006