Locus 1963

Sequence ID 2L_DroMel_CAF1
Location 5,318,174 – 5,318,268
Length 94
Max. P 0.554786
window3178

overview

Window 8

Location 5,318,174 – 5,318,268
Length 94
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 84.03
Mean single sequence MFE -37.48
Consensus MFE -27.90
Energy contribution -29.23
Covariance contribution 1.34
Combinations/Pair 1.15
Mean z-score -1.75
Structure conservation index 0.74
SVM decision value 0.04
SVM RNA-class probability 0.554786
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5318174 94 - 22407834
CAGGCGGAGCUGUGGUGACCACCA------GCCAAGUUAACAGCGGCACAAGUGUGGUUCAUGCAACACGUGGAGCCACCGCUGCGGCUGCCAGUACCAC
(((.((.(((.(((((..((((..------(((...........)))....((((.((....)).)))))))).))))).))).)).))).......... ( -36.10)
>DroSec_CAF1 93714 94 - 1
CAGGCGGAGCUGUGGUGACCACCA------GCCAAGCUAACAGCGGCACAAGCGUGGUUCAUGCAACACGUGGAGCCACCGCAGCGGCUGCCAGCACCAC
..(((((.(((((((((.((((..------(((..((.....)))))....(((((...))))).....))))...)))))))))..)))))........ ( -42.00)
>DroSim_CAF1 98884 94 - 1
CAGGCGGAGCUGUGGUGACCACCA------GCCAAGCUAACAGCGGCACAAGCGUGGUUCAUGCAACACGUGGAGCCACCGCAGCGGCUGCCAGCACCAC
..(((((.(((((((((.((((..------(((..((.....)))))....(((((...))))).....))))...)))))))))..)))))........ ( -42.00)
>DroEre_CAF1 91338 94 - 1
CAGGCGGUGCUGUGGUGACCACCA------GCCAAGUUAACAGCGGCACGAGUGUGGUGCAUGCAACACGGGGAGCCACCGCAGCGGCUGCCAGCACCAC
..(((((((((((((((.((.((.------(((...........)))....((((.((....)).))))))))...))))))))).))))))........ ( -40.50)
>DroYak_CAF1 98530 94 - 1
CAGGCGGUGCUGUGGUGACCACAA------GCCAAGUCAACAGCGGCACGAAUGUAGUUCAUGCAACACGAGGAGCCACUGCAGCUGCUGCUAGCACCAC
.....(((((((((((........------))))......(((((((.....((((((....((..(....)..)).))))))))))))).))))))).. ( -31.70)
>DroPer_CAF1 114449 97 - 1
CUGGUGGAGCUGUUCUGGCCACCAGCAGCAGCCAAAACAACAGCAACACAAAUGUGGUACAUGCUACACGUGGCGCCACAGCUGCAGCAGCCGGCGG---
...((.(.((((((.(((...)))(((((.((..........))........((((((.((((.....))))..)))))))))))))))))).))..--- ( -32.60)
>consensus
CAGGCGGAGCUGUGGUGACCACCA______GCCAAGUUAACAGCGGCACAAGUGUGGUUCAUGCAACACGUGGAGCCACCGCAGCGGCUGCCAGCACCAC
..(((((.(((((((((.((((........(((...........)))....((((.((....)).))))))))...)))))))))..)))))........ (-27.90 = -29.23 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:06 2006