| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,293,032 – 5,293,125 |
| Length | 93 |
| Max. P | 0.999207 |
| Location | 5,293,032 – 5,293,125 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 62.99 |
| Mean single sequence MFE | -31.64 |
| Consensus MFE | -14.68 |
| Energy contribution | -15.93 |
| Covariance contribution | 1.26 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.82 |
| Structure conservation index | 0.46 |
| SVM decision value | 3.43 |
| SVM RNA-class probability | 0.999207 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5293032 93 - 22407834 CUGGUUCUUGU-CUCGCUCGCACUCGCAGCCCCACCGGCUAAAUGGCAUACGCAAUGUGUGCCCAAAUGCGAGUGUGUGUGUGUGUGAGAGAGU ....((((..(-(.(((.(((((((((((((.....))))....(((((((.....))))))).....))))))))).))).).)..))))... ( -40.20) >DroWil_CAF1 30993 76 - 1 CUUUUUUUUAUGCCCGCUCGCA-----------------AAAAUGGC-CACGCAAUAUCUGUAUAUGUGUGGGUCUGUCUAUAUGUGAGUGUAU ..............((((((((-----------------.....(((-(((((((((....))).))))).))))........))))))))... ( -19.32) >DroYak_CAF1 72978 83 - 1 CUUGUUCUUGU-CUCGCUCGCACUCGCAGCCCCACCGGCUAAACGGCAUACGCAAUGUGUGCCCAAAUGCGAGU----------GUGUGUGUGU ...........-(.(((.(((((((((((((.....))))....(((((((.....))))))).....))))))----------))).))).). ( -35.40) >consensus CUUGUUCUUGU_CUCGCUCGCACUCGCAGCCCCACCGGCUAAAUGGCAUACGCAAUGUGUGCCCAAAUGCGAGU_UGU_U_U_UGUGAGUGUGU ...............(((((((.....((((.....))))....(((((((.....)))))))....))))))).................... (-14.68 = -15.93 + 1.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:59 2006