Locus 1954

Sequence ID 2L_DroMel_CAF1
Location 5,274,520 – 5,274,637
Length 117
Max. P 0.509565
window3163

overview

Window 3

Location 5,274,520 – 5,274,637
Length 117
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.65
Mean single sequence MFE -42.05
Consensus MFE -19.72
Energy contribution -20.03
Covariance contribution 0.31
Combinations/Pair 1.42
Mean z-score -1.80
Structure conservation index 0.47
SVM decision value -0.05
SVM RNA-class probability 0.509565
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5274520 117 - 22407834
G---AUCUCUCACCCCGGAAAGCCGUUCGAAGGAACUGGAGACCAGUCUAGAGCAAAUGCAGCGUGCCUAUGAGGAUUGCGAGGACUACUGGCAAACGAAACUUAGCGAGGAGCGGCAGC
.---.................(((((((...(((.((((...))))))).)))).......((...(((.((((..((((.((.....)).))))......))))...))).)))))... ( -31.00)
>DroVir_CAF1 5194 120 - 1
GUCGUGCCACCACGCCGGAGACACGCUGCAAGGAGCUAGAAAACAGUUUGGAGCAAAUGCAGCGCGCUUACGAGGAUUGCGAGGAUUACUGGCAAACCAAACUAAGCGAGGAACGGCAAA
(((((.((........(....).(((((((..(..(((((......)))))..)...)))))))((((((...((.((((.((.....)).)))).))....)))))).)).)))))... ( -43.40)
>DroPse_CAF1 54440 117 - 1
C---AGGAGCCGCACCAGACAGCCGCUGCAAGGAGCUGGAGGGCAGUCUGGAGCAGAUGCAGCGCGCAUAUGAGGAAUGCGAGGAUUAUUGGCAAUCGAAGUUGGGCGAAGAGCGUCAGA
.---.......((.((((((.(((.((.((......)).))))).)))))).)).(((((..(((.((.((...((.(((.((.....)).))).))...)))).)))....)))))... ( -40.70)
>DroGri_CAF1 2375 120 - 1
GUCGAGCCACCACGCCGGAGACACGCUGCAAGGAGCUGGAGAAUAGUCUGGAGCAGAUGCAGCGUGCAUACGAGGAUUGCGAGGAUUACUGGCAGUCCAAGCUGAGCGAGGAGCGACAAA
((((..((....((((((.(.(((((((((..(..(..((......))..)..)...))))))))))......(((((((.((.....)).)))))))...))).))).))..))))... ( -52.60)
>DroWil_CAF1 5541 117 - 1
A---AUCUAGCACACCGGAGACACGUUGCACGGAUUUGGAGGCCAGUUUGGAGCAAAUGCAACGUGCCUAUGAGGAAUGCGAGGAUUAUUGGCAAUCAAAGCUGAGCGAUGAACGGCAAA
.---.....((.....(....).((((((.(((.(((((..((((((.....((....))..(((.((.....))...)))......))))))..))))).))).))))))....))... ( -32.20)
>DroAna_CAF1 30293 117 - 1
G---GUCCCUCAGUCCUGAGAGCCGGUCGAAAGACCUGGAAGCCAGCUUGGAGCAGAUGCAGCGGGCCUACGAGGACUGCGAGGACUACUGGCAGUCGAAGCUCAGCGACGAGCGCCAGA
(---(((((.(((((((.....((((((....)))).))..(((.(((....((....))))).))).....))))))).).))))).(((((..(((..((...))..)))..))))). ( -52.40)
>consensus
G___AGCCACCACACCGGAGACACGCUGCAAGGAGCUGGAGACCAGUCUGGAGCAAAUGCAGCGUGCCUACGAGGAUUGCGAGGAUUACUGGCAAUCGAAGCUGAGCGAGGAGCGGCAAA
.......................(((((((..(..(((((......)))))..)...)))))))(((.......((((((.((.....)).))))))........)))............ (-19.72 = -20.03 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:52 2006