Locus 1950

Sequence ID 2L_DroMel_CAF1
Location 5,263,805 – 5,263,917
Length 112
Max. P 0.718475
window3157

overview

Window 7

Location 5,263,805 – 5,263,917
Length 112
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 76.23
Mean single sequence MFE -24.69
Consensus MFE -9.52
Energy contribution -12.72
Covariance contribution 3.20
Combinations/Pair 1.21
Mean z-score -1.92
Structure conservation index 0.39
SVM decision value 0.39
SVM RNA-class probability 0.718475
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5263805 112 - 22407834
AACAAUAACAAUCUCAAAACAGCUUUCUGUUAUCAGGAAGCCAAUUAUAUGGUUGGAUUAUAUCAAUUAUUGUGGUUGAGUGCUGUUGAGUUCUAUUCUUUUUUAUACUCGA
.((((((((((((........((((((((....)))))))).........)))))(((...)))..)))))))..(((((((..(..(((.......)))..)..))))))) ( -24.43)
>DroSec_CAF1 40523 101 - 1
AACAAUAACAAUCUCAAAACAGCUUUCUGUUAUCAGGAAGCCAAUUAUAUGGUUGGAUUAUUUCAAUUAUUGUGGUUGGGAGU-----------GUUUGUAUUUAUACUCAA
........(((((.(((....((((((((....))))))))........((((((((....))))))))))).))))).((((-----------((........)))))).. ( -27.90)
>DroSim_CAF1 41937 112 - 1
AACAAUAACAAUCUGAAAACAGCUUUCUGUUUUUGGGAAGCCAAUUAUUUGGUUGGAUUAUUUCAAUUAUUGUGGUUGGGAGCUGUUGGGUUCUAUUCUUAUUUAUACUCAA
...........((..(((((((....)))))))..))...((((((((.((((((((....))))))))..))))))))(((((....)))))................... ( -26.70)
>DroEre_CAF1 33857 108 - 1
AACAAUAACAAUGUCAAAACAGCUUUCUGUUAUCA----GUGAAUUAUACGGUUGGAUUCUCGCAACUAUAGUUACUGUGCUCAGCCAGAUUAGUUUGAUACUUAUACUGGA
...........(((((((....((..(((....((----((((....((..(((((.....).))))..)).))))))....)))..)).....)))))))........... ( -20.70)
>DroYak_CAF1 42979 107 - 1
AACAAUAACAAUCGCAAAACAGCUUUCUGUUAUCA----ACCAAUUAUAUGGUUGGAUUAUUUCAAUUAUGGCUGCUGGGAUU-GUUAGGUUCUUUUGAUACAUACACUUGA
..(((((((((((.((...(((((....(((..((----((((......))))))((.....)))))...))))).)).))))-))))(..((....))..)......))). ( -23.70)
>consensus
AACAAUAACAAUCUCAAAACAGCUUUCUGUUAUCAGGAAGCCAAUUAUAUGGUUGGAUUAUUUCAAUUAUUGUGGUUGGGAGC_GUUAGGUUCUAUUCAUAUUUAUACUCGA
.....................((((((((....))))))))((((((((((((((((....))))))))).))))))).................................. ( -9.52 = -12.72 +   3.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:46 2006