| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,262,249 – 5,262,360 |
| Length | 111 |
| Max. P | 0.983230 |
| Location | 5,262,249 – 5,262,360 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 73.59 |
| Mean single sequence MFE | -28.63 |
| Consensus MFE | -14.13 |
| Energy contribution | -14.82 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.63 |
| Structure conservation index | 0.49 |
| SVM decision value | 1.94 |
| SVM RNA-class probability | 0.983230 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5262249 111 + 22407834 AAUUGCGCUGAGAGAAUCGCAAAACCACGCUGCGAAUCACGUACAUAAAUAAAUAAAUACGCAGGCGUAUGACCGUAUGUUUGUGUACUCAUGCCGCAACGGAAGCUGC------AA ....(((.((((.((.(((((.........))))).))...................(((((((((((((....)))))))))))))))))))).(((.(....).)))------.. ( -34.30) >DroYak_CAF1 41317 110 + 1 AUUUGCCCUAAGAGAAUCGCAA-ACCACGCCGCGAAUCACGUACGUAAAUAAAUAAAUACGCAGGCGUAUGACCGUAUGUUUGUGUACUCACGCCGCAGCGGAAGCUGC------AA ((((((.....(.((.((((..-........)))).)).)....)))))).......(((((((((((((....)))))))))))))........(((((....)))))------.. ( -35.40) >DroAna_CAF1 20104 99 + 1 AUACGCCCUAAAAGAAUUGCAA-ACCGCACCGAGAAUCACGUACAUAAAUAAAUAAAUAGCCAGU----------AAUGUUUGUAUAUUCACACCGCAGCGGAAGCUGC------A- .((((............(((..-...)))..(.....).))))....((((.(((((((......----------..))))))).))))......(((((....)))))------.- ( -18.80) >DroPer_CAF1 41370 99 + 1 ---GGCCCUACAAGAAUGGCAA-ACCGCAGAUCGA--CACGUACAUAAAUAAAUAAAAAU------------CUGUAUGUUUGUAUAUUCACACCGCAGCGGAAGCUGCUACUGCAA ---.((.......(((((((((-((.((((((...--....((......)).......))------------))))..)))))).))))).....(((((....)))))....)).. ( -26.04) >consensus AUUUGCCCUAAAAGAAUCGCAA_ACCACACCGCGAAUCACGUACAUAAAUAAAUAAAUACGCAGG_______CCGUAUGUUUGUAUACUCACACCGCAGCGGAAGCUGC______AA ....(((.(......).)))....................(((((((((((..........................))))))))))).......(((((....)))))........ (-14.13 = -14.82 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:43 2006