Locus 1941

Sequence ID 2L_DroMel_CAF1
Location 5,252,204 – 5,252,313
Length 109
Max. P 0.689432
window3138

overview

Window 8

Location 5,252,204 – 5,252,313
Length 109
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 79.41
Mean single sequence MFE -31.12
Consensus MFE -22.74
Energy contribution -25.34
Covariance contribution 2.60
Combinations/Pair 1.12
Mean z-score -1.56
Structure conservation index 0.73
SVM decision value 0.33
SVM RNA-class probability 0.689432
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5252204 109 - 22407834
AAAUCUCGAGCUGUGCAUCUUGGGAUGCAAUUUCAAAUGGGUUUCGUUUGGGCCCCACUUUUUCGUUUCCCUCGAUUCGUUCACUGGUCUC---CACGACCAGUGUCCAGUG-----
.....(((((...((((((....))))))........((((..((....))..)))).............)))))...(..((((((((..---...))))))))..)....----- ( -33.80)
>DroSec_CAF1 29054 85 - 1
AAAUCUCGAGCUGUGCAUCUUGGGAUGCAAUUUCAAAUGGGCUUC-------------------GUUUCCCUCGAUUCGUUCGCUGGUCUC---CACGACCAGUGUC----------
.....((((....((((((....)))))).........(((....-------------------....)))))))......((((((((..---...))))))))..---------- ( -26.20)
>DroSim_CAF1 30489 109 - 1
AAAUCUCGAGCUGUGCAUCUUGGGAUGCAAUUUCAAAUGGGCUUCGUUUGGGCCCCACAUUUUCGUUUCCCUCGAUUCGUUCGCUGGUCUC---CACGACCAGUGUCCAGUG-----
.....(((((...((((((....)))))).........((((((.....))))))...............)))))...(..((((((((..---...))))))))..)....----- ( -35.70)
>DroEre_CAF1 21927 117 - 1
AAAUCUCGAGCUGUGCAUCUUGGGAUGCAAUUGGAAAUGGGCUUCGUUUGGGCUCCACUUUUUCGUUUCCCUCGAUGCGUUCACUGGUCUCCUCCACGUCCAGUGUCCAGUGUCCGU
......((.((((.(((((..((((.((....((((.(((((((.....)))).))).))))..)).))))..)))))...((((((.(........).))))))..))))...)). ( -36.10)
>DroYak_CAF1 31015 94 - 1
AAAUCUCGAGCUGUGCAUCUUGGGAUGCAAUUUGAAAUGGGCUUCGUUUGGGCCCCACAACUUCGUUUCCCUCGAUUCGUACACUGGCCAC---CAC--------------------
......(.((.((((((((..((((.((((.(((....((((((.....))))))..))).)).)).))))..)))..))))))).)....---...-------------------- ( -23.80)
>consensus
AAAUCUCGAGCUGUGCAUCUUGGGAUGCAAUUUCAAAUGGGCUUCGUUUGGGCCCCACAUUUUCGUUUCCCUCGAUUCGUUCACUGGUCUC___CACGACCAGUGUCCAGUG_____
.....(((((...((((((....)))))).........((((((.....))))))...............)))))......((((((((........))))))))............ (-22.74 = -25.34 +   2.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:28 2006