| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 582,697 – 582,791 |
| Length | 94 |
| Max. P | 0.539125 |
| Location | 582,697 – 582,791 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 86.67 |
| Mean single sequence MFE | -24.03 |
| Consensus MFE | -17.41 |
| Energy contribution | -18.30 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.539125 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 582697 94 + 22407834 UCUCUCACCUGAAUGGACCUGAACUUGCAGCUCCGGCUG-----CGCCAAAGGAAAAUAACAAGAUGGAACUUUGGCAA--AGAGAAAAACAAAA-----AAAAAG ..((((.((.....))..........(((((....))))-----)(((((((....((......))....)))))))..--.)))).........-----...... ( -24.60) >DroSec_CAF1 14120 94 + 1 UCUCUCACCUGAAUGGACCUGAACUUGCAGCUCCGGCUG-----CGCCAAAGGAAAAUAACAAGAUGGAACUUUGGCAA--AGAGAAAAACAAAA-----AAAAAA ..((((.((.....))..........(((((....))))-----)(((((((....((......))....)))))))..--.)))).........-----...... ( -24.60) >DroSim_CAF1 11828 94 + 1 UCUCUCACCUGAAUGGACCUGAACUUGCAGCUCCGGCUG-----CGCCAAAGGAAAAUAACAAGAUGGAACUUUGGCAA--AGAGAAAAACAAAA-----AAAAAA ..((((.((.....))..........(((((....))))-----)(((((((....((......))....)))))))..--.)))).........-----...... ( -24.60) >DroEre_CAF1 14393 99 + 1 UCUCUCACCUGAAUGGACCUGAACGUGCAGCUCCGGCUU-----CGCCAAAGGAAAAUAACAAGCUGGAACUUUGGCAA--AGAGAAAAACAAAAAGAGAAAAAAG ..((((.......((((.(((......))).)))).(((-----.(((((((..................))))))).)--)).............))))...... ( -22.47) >DroYak_CAF1 14223 94 + 1 UCUCUCACCUGAAUGGACCUGUACGUGCAGCUCCGGCUU-----CGCCAAAGGAAAAUAACAAGAUGGAACUUUGGCAA--AGAGAAAAACAAAA-----AAAAAG ..((((....(((((((.((((....)))).))))..))-----)(((((((....((......))....)))))))..--.)))).........-----...... ( -23.60) >DroAna_CAF1 15298 100 + 1 UCUCUCACCUGAGUG-ACCCCAGCUUCCUGUGCUGGCCUUUGCCUGCCGAACGAAAAUAACAAGAUGGAAACUUGGCCAGGAGAGAAAAACACAA-----AGAUAA ..((((.((((.(..-(..(((((.......)))))...)..)..(((((..(.......).....(....)))))))))).)))).........-----...... ( -24.30) >consensus UCUCUCACCUGAAUGGACCUGAACUUGCAGCUCCGGCUG_____CGCCAAAGGAAAAUAACAAGAUGGAACUUUGGCAA__AGAGAAAAACAAAA_____AAAAAA ..((((.......((((.(((......))).))))..........(((((((....((......))....))))))).....)))).................... (-17.41 = -18.30 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:55 2006