Locus 1939

Sequence ID 2L_DroMel_CAF1
Location 5,249,891 – 5,249,982
Length 91
Max. P 0.668115
window3134

overview

Window 4

Location 5,249,891 – 5,249,982
Length 91
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 72.51
Mean single sequence MFE -25.33
Consensus MFE -11.97
Energy contribution -12.30
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.35
Structure conservation index 0.47
SVM decision value 0.28
SVM RNA-class probability 0.668115
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5249891 91 + 22407834
UGGGAAACCAAGGAGACACAACCUGGUCAGGAUGCACUGGCAGAAAUUGU--------AGCUA-UUGUAGUCAACAAAUGGUUGUGUUUUCAAAAAGAGC
(((....))).((((((((((((..(((((......))))).....((((--------.((((-...))))..))))..))))))))))))......... ( -32.50)
>DroSec_CAF1 26739 91 + 1
UGGGAAACCAAGGAGACACAACCUGGUCAGGAUGCACUGGCCGAAAUUGU--------AGCUA-CUGUUGUCAACAAAUGUUUAUAUUUUCAACAAGAGC
(((....))).(....)((((..(((((((......)))))))...))))--------.(((.-.(((((.....(((((....))))).)))))..))) ( -25.10)
>DroEre_CAF1 19571 90 + 1
UGGGAAACCAAGGAGACACAACCCGGUCAAGAUGCACUGGCAGAAAAACUAUUGAUGUAGCUAACACUUGGUAA----------UACCUUCCAAGGGAGU
(((....))).(....)....(((.(((((..(((....))).........)))))...........((((...----------......)))))))... ( -18.40)
>consensus
UGGGAAACCAAGGAGACACAACCUGGUCAGGAUGCACUGGCAGAAAUUGU________AGCUA_CUGUUGUCAACAAAUG_UU_UAUUUUCAAAAAGAGC
(((....))).(....)........(((((......)))))........................................................... (-11.97 = -12.30 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:25 2006