Locus 1937

Sequence ID 2L_DroMel_CAF1
Location 5,245,673 – 5,245,782
Length 109
Max. P 0.605627
window3129

overview

Window 9

Location 5,245,673 – 5,245,782
Length 109
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 83.12
Mean single sequence MFE -31.70
Consensus MFE -21.92
Energy contribution -22.25
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 0.69
SVM decision value 0.15
SVM RNA-class probability 0.605627
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5245673 109 + 22407834
GGGAUCACUGAGUGCCACUUCAAUUUGUUUACAACAAGUUGGCCCGCUGAUUGCAGCUGGGCCUCAUUUCAUACACACUUUAAAAAAUCAAUUUUCG----------ACUUGCAUUUAA
........(((((((....(((((((((.....)))))))(((((((((....)))).))))).................................)----------)...))))))). ( -26.30)
>DroSec_CAF1 22567 118 + 1
GGGAUCACUGAGUGCCACUUCAAUUUGUUUACAACAAGUUGGCCCGCUGAUUGCAGCUGGGCCUCAUUUCAUGCACACUUGGAAAAAUCAAUU-UUGACCAUUCGGGAUUUGAAUUUAA
.(((((.((((((((......(((((((.....)))))))(((((((((....)))).))))).........))))...(((..(((.....)-))..))).)))))))))........ ( -34.60)
>DroSim_CAF1 23738 119 + 1
GGGAUCACUGAGUGCCACUUCAAUUUGUUUACAACAAGUUGGCCCGCUGAUUGCAGCUGGGCCUCAUUUCAUGCACACUUGGAAAAAUCAAUUUUUGACCAUUCGGUAUUUGGAUUUAA
.((((((((((((((......(((((((.....)))))))(((((((((....)))).))))).........))))...(((.((((.....))))..))).))))).....))))).. ( -33.00)
>DroEre_CAF1 14835 119 + 1
GGGAUCACUGAGUGCCACUUCAAUUUGUUUACAACAAGUUGGCCCGCUGAUUGCAGCUGGGCCUCAUUUCAUCCACACUUCAAGAAAUCAAUGUUGGCCCAUUAGGGAUUUGGAUUUAA
.((((...((((........((((((((.....))))))))((((((((....)))).))))))))....))))..........(((((........(((....))).....))))).. ( -32.62)
>DroYak_CAF1 24630 119 + 1
GGGAUCACUGAGUGCCACUUCAAUUUGUUUACAACAAGUUGGCCCGCUGAUUGCAGCUGGGCCUCAUUUCAUCCACACUUCAAAAAAUCUAUGUUUGACCAUUCGGGAUUUGGAUUUAA
.((((...((((........((((((((.....))))))))((((((((....)))).))))))))....))))..........(((((((..(((((....)))))...))))))).. ( -32.70)
>DroAna_CAF1 3693 98 + 1
GGCAUCACUGAGUGCCACUUCAAUUUGUUUACAACAAGUUGGCCCGCUGAUUGCAGCUGGGACUCGUCUCCCAAUCACUGGAAGAA-UAGUGUCUAGGC--------------------
(((((......)))))....((((((((.....))))))))(((.((((....))))..((((.(.(((.(((.....))).))).-..).)))).)))-------------------- ( -31.00)
>consensus
GGGAUCACUGAGUGCCACUUCAAUUUGUUUACAACAAGUUGGCCCGCUGAUUGCAGCUGGGCCUCAUUUCAUACACACUUGAAAAAAUCAAUUUUUGACCAUUCGGGAUUUGGAUUUAA
.........(((((.......(((((((.....)))))))(((((((((....)))).)))))............)))))....................................... (-21.92 = -22.25 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:20 2006