Locus 193

Sequence ID 2L_DroMel_CAF1
Location 577,292 – 577,385
Length 93
Max. P 0.667671
window288

overview

Window 8

Location 577,292 – 577,385
Length 93
Sequences 5
Columns 93
Reading direction reverse
Mean pairwise identity 91.50
Mean single sequence MFE -32.86
Consensus MFE -26.80
Energy contribution -26.48
Covariance contribution -0.32
Combinations/Pair 1.12
Mean z-score -1.45
Structure conservation index 0.82
SVM decision value 0.28
SVM RNA-class probability 0.667671
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 577292 93 - 22407834
GGCUCCCUACGAACAGGGGUAUAUACUAUGUGCCUAAGAGGUCUGACCCGGUCUAGCCUCUUGGACAGUCGUUCUAGCCGGGCUUGUUAUGCC
((((....((((....((((((((...))))))))(((((((..(((...)))..)))))))......))))...)))).(((.......))) ( -31.50)
>DroSec_CAF1 8800 91 - 1
GGCUCCCUACGAGCUGGGGUCUAUACUAUGU--CUAAGAGGUCUGACCCGGUCUAGCCUCUUGGACAGUCGUUCUAGCCGGGCUUGUUAUGCC
(((.....(((((((.((.(....((..(((--(((((((((..(((...)))..))))))))))))...))...).)).)))))))...))) ( -40.10)
>DroSim_CAF1 6189 91 - 1
GGCUCCCUACGAGCAGGGGUCUAUACUAUGU--CUAAGAGGUCUGACCCGGUCUAGCCUCUUGGACAGUCGUUCUAGCCGGGCUUGUUAUGCC
(((.....((((((...((.(((.((..(((--(((((((((..(((...)))..))))))))))))...))..)))))..))))))...))) ( -38.00)
>DroEre_CAF1 8797 91 - 1
GGCUCCCUACAAGUAAGGGUCUAUACCAUGU--CUGAAAGGUCUGACCCGGUCUAGCCUCUUGGGCAGUCGUUCUAGCCGGGCGUGUUAUGCC
((((((((.......)))).........(((--(..(.((((..(((...)))..)))).)..))))........)))).(((((...))))) ( -27.60)
>DroYak_CAF1 8701 91 - 1
GGCUCCCUACACGUAAGGGUCUAUACCAUGU--CUGAAAGGUCUGACCCGGUCUAGCCUCUUGGGCAGUCGUUGUAGCCGGGCUCGUUAUGCC
(((((.(((((((...((.......)).(((--(..(.((((..(((...)))..)))).)..))))..)).)))))..)))))......... ( -27.10)
>consensus
GGCUCCCUACGAGCAGGGGUCUAUACUAUGU__CUAAGAGGUCUGACCCGGUCUAGCCUCUUGGACAGUCGUUCUAGCCGGGCUUGUUAUGCC
((((((((.......)))).........(((..(((((((((..(((...)))..))))))))))))........)))).(((.......))) (-26.80 = -26.48 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:54 2006