Locus 1928

Sequence ID 2L_DroMel_CAF1
Location 5,232,029 – 5,232,149
Length 120
Max. P 0.551476
window3116

overview

Window 6

Location 5,232,029 – 5,232,149
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 81.80
Mean single sequence MFE -36.08
Consensus MFE -28.86
Energy contribution -29.50
Covariance contribution 0.64
Combinations/Pair 1.07
Mean z-score -1.46
Structure conservation index 0.80
SVM decision value 0.04
SVM RNA-class probability 0.551476
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5232029 120 + 22407834
CCCGAUGGAGUUUCGUUUUUGGGCCGGCAGGAAGCUGCAUUUACAUAUGCCCAAGGAUGCAUAUGUGCGAGUACGUGUAUCUGGCAGAUACAUAUCAUUUCACUUGCCCAGCCCCACAGC
..(((.......))).....((((.((((((..(((((....((((((((........)))))))))).)))..(((((((.....))))))).........))))))..))))...... ( -36.30)
>DroSec_CAF1 9341 103 + 1
CCCGAUGGAGUUUCGUU-UUGGGCCGGCAGGAAGCUGCAUUUACAU----------------AUGUGCGAGUACGUGUAUCUGGCAGAUACAUAUCAUUUCACUUGCCCAGCCCCACAGC
..(((.......)))..-..((((.((((((..(((((((......----------------..)))).)))..(((((((.....))))))).........))))))..))))...... ( -30.60)
>DroSim_CAF1 10271 103 + 1
CCCAAUGGAGCUUCGUU-UAGGGCCGGCAGGAAGCGGCAUUUACAU----------------AUGUGCGAGUACGUGUAUCUGGCAGAUACAUAUCAUUUCACUUGCCCAGCCCCACAGC
.........(((..((.-..((((.((((((..(((.(((......----------------))))))(((...(((((((.....))))))).....))).))))))..)))).))))) ( -29.10)
>DroEre_CAF1 2162 107 + 1
-----------UUCAUU-UUGGGCCGGCAGGAAGCCGCAUUUACAUAUGCCCGAG-CUGCAUGUGUGCGAGUACGUGUAUCUGGCAGAUACAUAUCACUGCACUUGCCCAGCCCCACAGC
-----------......-..((((.((((((..(((((....((((((((.....-..))))))))))).))..(((((((.....))))))).........))))))..))))...... ( -36.60)
>DroYak_CAF1 11164 118 + 1
GCUGAUGGCUUUUCAUUUUUGGGCCGGCAGGAAGCUGCAUUUACAUACGCUCCAG-AUGCAUGUGCGCGAGUACGUGUAUCUGGCAGAUACAUAUCAUUUUACUUGCCC-GCCCCACAGC
((((((((....))))....((((.((((((....................((((-((((((((((....))))))))))))))..(((....)))......)))))).-))))..)))) ( -47.80)
>consensus
CCCGAUGGAGUUUCGUU_UUGGGCCGGCAGGAAGCUGCAUUUACAUA_GC_C_AG__UGCAUAUGUGCGAGUACGUGUAUCUGGCAGAUACAUAUCAUUUCACUUGCCCAGCCCCACAGC
....................((((.((((((..(((((....((((((((........))))))))))).))..(((((((.....))))))).........))))))..))))...... (-28.86 = -29.50 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:08 2006