Locus 1927

Sequence ID 2L_DroMel_CAF1
Location 5,231,836 – 5,231,949
Length 113
Max. P 0.728269
window3115

overview

Window 5

Location 5,231,836 – 5,231,949
Length 113
Sequences 4
Columns 117
Reading direction forward
Mean pairwise identity 94.22
Mean single sequence MFE -28.20
Consensus MFE -24.63
Energy contribution -24.44
Covariance contribution -0.19
Combinations/Pair 1.04
Mean z-score -1.70
Structure conservation index 0.87
SVM decision value 0.42
SVM RNA-class probability 0.728269
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5231836 113 + 22407834
ACGGCAUACAAUCCACUCAAAUUUCACUUCAUUUAUCACGAAAUCCAUCAUCAGCCA-ACGGCC---GGCAGCAGUUAGCAAAGGAGCUGGAAAGCCAGAGAGAUGAAGGAGAGCCA
..(((................((((.((((((((.((......(((.......(((.-......---))).((.....))...)))(((....)))..)).))))))))))))))). ( -27.89)
>DroSec_CAF1 9150 114 + 1
ACGGCAUACAAUCCACUAAAAUUUCACUUCAUUUAUCACGAAAUCCAUCAUCAGCCAAACGGCC---AGCAGCAGUUAGCAAAGGAGCUGGAAAGCCACAGAGAUGAAGGAGAGCCA
..(((.((........))...((((.((((((((.........(((.......(((....))).---....((.....))...)))(((....))).....))))))))))))))). ( -25.60)
>DroSim_CAF1 10080 114 + 1
ACGGCAUACAAUCCACUCAAAUUUCACUUCAUUUAUCACGAAAUCCAUCAUCAGCCAAACGGCC---AGCAGCAGUUAGCAAAGGAGCUGGAAAGCCAGCGAGAUGAAGGAGAGCCA
..(((................((((.((((((((.........(((.......(((....))).---....((.....))...)))(((((....))))).))))))))))))))). ( -29.99)
>DroEre_CAF1 1974 116 + 1
ACGGCACACAGUCCACUCAAAUUUCACUUCAUUUAUCACGAAAUCCAUCAUCAGCCA-ACGGCCAUCAGCAGCAGUUAGCAAAGGAGCUGGAAAGUCUGAAAGAUGAAGGAGAGCCA
..(((....((....))....((((.((((((((.(((.((..((((...((.((.(-((.((........)).))).))....))..))))...))))).))))))))))))))). ( -29.30)
>consensus
ACGGCAUACAAUCCACUCAAAUUUCACUUCAUUUAUCACGAAAUCCAUCAUCAGCCA_ACGGCC___AGCAGCAGUUAGCAAAGGAGCUGGAAAGCCAGAGAGAUGAAGGAGAGCCA
..(((................((((..............))))(((.(((((.(((....)))........((..(((((......)))))...))......))))).)))..))). (-24.63 = -24.44 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:07 2006