Locus 1926

Sequence ID 2L_DroMel_CAF1
Location 5,231,199 – 5,231,318
Length 119
Max. P 0.585252
window3114

overview

Window 4

Location 5,231,199 – 5,231,318
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 81.32
Mean single sequence MFE -25.86
Consensus MFE -20.70
Energy contribution -21.38
Covariance contribution 0.68
Combinations/Pair 1.13
Mean z-score -1.47
Structure conservation index 0.80
SVM decision value 0.10
SVM RNA-class probability 0.585252
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5231199 119 + 22407834
AUGCCGCCGUGCUGUCUGUGCGACACAUUUACCAACCAACAACAAAAGUUGGUGAGUGGUUCCCAUAAAAGUUAGAAUAUGUCCAGCAACAAAGCGAGUGUGUAUUAAAA-AUCAUUUUU
((((((((((..(((.(((..(((((((((((((((...........)))))))))))((((..((....))..)))).))))..))))))..))).))).)))).....-......... ( -29.60)
>DroSec_CAF1 8525 108 + 1
AUGCCGCCGUGCUGUCUGUGCGACACAUUUACCAACCAACAACAAAAGUUGGUGAGUGGGUACCAUAAAAGUUAGAAUA-----------GAAGCGAGUGUGUAUAAAAA-AUCAUAUUU
((((((((((....(((((..(((.(((((((((((...........)))))))))))(....)......)))...)))-----------)).))).))).)))).....-......... ( -27.50)
>DroSim_CAF1 9453 108 + 1
AUGCCGCCGUGCUGUCUGUGCGACACAUUUACCAACCAACAACAAAAGUUGGUGAGUGGGUACCAUAAAAGUUAGAAUA-----------GAAGCGAGUGUGUAUCAAAA-AUCAUAUUG
((((((((((....(((((..(((.(((((((((((...........)))))))))))(....)......)))...)))-----------)).))).))).)))).....-......... ( -26.90)
>DroEre_CAF1 1331 118 + 1
AUGCCGCCGCGCUGUCUGUGCGACACACUUACCAACCAACAACAAAACUUGGUGAGUGGGUCCAAUAAAAGUUAGAAUAUGCCCACUAACAAAGCGAGUAUA--CCAAAAAAGCACAUUU
(((((((.((((.....))))(((.((((((((((.............)))))))))).)))........(((((..........)))))...))).)))).--................ ( -30.72)
>DroYak_CAF1 10346 107 + 1
AUGCCGCCGUGCUGUCUGUGCGACACAUUUACCAACCAACAACAAAAGCUGGUGA------------AAAGUUAGAAUAUCUCCACCAACAAAGCGCCUAUAUAUCCAAA-AUGAUAUUU
........((((((((.....)))...(((((((...............))))))------------)........................)))))....(((((....-..))))).. ( -14.56)
>consensus
AUGCCGCCGUGCUGUCUGUGCGACACAUUUACCAACCAACAACAAAAGUUGGUGAGUGGGUACCAUAAAAGUUAGAAUAU__CCA__AACAAAGCGAGUGUGUAUCAAAA_AUCAUAUUU
((((((((((((.....)))))...(((((((((((...........)))))))))))...................................))).))))................... (-20.70 = -21.38 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:06 2006