| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,228,667 – 5,228,777 |
| Length | 110 |
| Max. P | 0.713506 |
| Location | 5,228,667 – 5,228,777 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 86.62 |
| Mean single sequence MFE | -24.63 |
| Consensus MFE | -20.53 |
| Energy contribution | -20.53 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.713506 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5228667 110 + 22407834 GUCGACUGGAGGGAGAGGAGGCUGUUUGGCGAGUAGGGGAGGAGCGAAAAGACUUUAACCCAAAGUUGAAGUCAAAACAAAAUCGUUUGUUUUCCUAACAAAAAAAAAAA .(((.(..((.((........)).))..)))).((((..((((((((...(((((((((.....))))))))).........)))))).))..))))............. ( -27.10) >DroSec_CAF1 6112 94 + 1 GUCGGCUGGAGGUAAAGGAGGCUGUGUG--------UGGAGGAGCGAAAAGACUUUAACCCAAAGUUGAAGUCAAAACAAAAUCGUUUGUUUUCCUAACAAA-------- ..(((((............)))))..((--------(..((((.......(((((((((.....))))))))).(((((((....))))))))))).)))..-------- ( -23.20) >DroSim_CAF1 7008 94 + 1 GUCGGCUGGAGGGAAAGGAGGCUGUGUG--------UGGAGGAGCGAAAAGACUUUAACCCAAAGUUGAAGUCAAAACAAAAUCGUUUGUUUUCCUAACAAA-------- ......((..(((((((.((((....((--------(......)))....(((((((((.....)))))))))...........)))).)))))))..))..-------- ( -23.60) >consensus GUCGGCUGGAGGGAAAGGAGGCUGUGUG________UGGAGGAGCGAAAAGACUUUAACCCAAAGUUGAAGUCAAAACAAAAUCGUUUGUUUUCCUAACAAA________ (((..((........))..))).................((((.......(((((((((.....))))))))).(((((((....))))))))))).............. (-20.53 = -20.53 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:45 2006