| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 574,970 – 575,077 |
| Length | 107 |
| Max. P | 0.726786 |
| Location | 574,970 – 575,077 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 92.52 |
| Mean single sequence MFE | -41.60 |
| Consensus MFE | -34.97 |
| Energy contribution | -36.20 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.726786 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 574970 107 + 22407834 AAGGAGCAGUGCCAGUCCAAGAGGAAGCGCUAUAUGCAGCUGUACUGCACCCACAUCUGGUACGAGGAUUGGGCGUGCAACGAGUGCUGCAAGGGAGAUCGGUGCAA .....(((((((...(((....))).)))))...((((((.....(((((((..((((.......))))..)).)))))......))))))............)).. ( -33.30) >DroPse_CAF1 15093 107 + 1 AAGGAGCAGUGCCAGUCCAAGCGGAAGCGCUACAUGCAGCUCUACUGUACCCACAUCUGGUACGAGGAUUGGGCCUGCAACGAGUGUUGCCCAGGCGAUCGCUGCAA .....(((((((((((((.((..((.((((.....)).))))..))(((((.......)))))..)))))))(((((((((....)))))..))))...)))))).. ( -44.80) >DroPer_CAF1 15077 107 + 1 AAGGAGCAGUGCCAGUCCAAGCGGAAACGCUAUAUGCAGCUCUACUGCACCCACAUCUGGUACGAGGAUUGGGCCUGCAACGAGUGUUGCCCAGGCGAUCGCUGCAA .....(((((((((((((.((((....))))...(((((.....))))).(((....))).....)))))))(((((((((....)))))..))))...)))))).. ( -46.70) >consensus AAGGAGCAGUGCCAGUCCAAGCGGAAGCGCUAUAUGCAGCUCUACUGCACCCACAUCUGGUACGAGGAUUGGGCCUGCAACGAGUGUUGCCCAGGCGAUCGCUGCAA .....(((((((((((((.((((....))))...(((((.....))))).(((....))).....)))))))(((((((((....)))))..))))...)))))).. (-34.97 = -36.20 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:53 2006