Locus 1913

Sequence ID 2L_DroMel_CAF1
Location 5,225,572 – 5,225,692
Length 120
Max. P 0.676699
window3077

overview

Window 7

Location 5,225,572 – 5,225,692
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 95.42
Mean single sequence MFE -38.41
Consensus MFE -36.34
Energy contribution -36.40
Covariance contribution 0.06
Combinations/Pair 1.03
Mean z-score -1.52
Structure conservation index 0.95
SVM decision value 0.30
SVM RNA-class probability 0.676699
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5225572 120 - 22407834
CAGGGUUCGUGUCUCGGCUAAGUGCCUCUUCAGACGUCACAGGCUCUUUCUGUUUGUUGGUAUUGCAGUUAAUGCUGCUUUUGUUUGGACUAGAAUUAGGGAGCUGAUGAUGCAUGAGCC
...((((((((....(((.....)))........(((((..((((((((((((..(........(((((....))))).......)..)).))))....))))))..))))))))))))) ( -38.76)
>DroSec_CAF1 3054 120 - 1
CGGGGUUCGUGUCUCGGCUAACUGCCUCUUCAGACGUCACAGGCUCUUUGUGUUUGUUGGUAUUGCAGUUACUGCUGCUUUUGUUUGGACUAGAAUUAGGGAGCUGAUGAUACAUGAGCC
...((((((((((((((((..(((..((((((((((((((((((.......))))).)))....(((((....)))))...)))))))...)))..)))..)))))).)))))..))))) ( -40.10)
>DroSim_CAF1 3945 120 - 1
CAUGGUUCGUGUCUCGGCUAAGUGCCUCUUCAGACGUCACAGGCUCUUUGUGUUUGUUGGUAUUGCAGUUACUGCUGCUUUUGUUUGGACUAGAAUUAGGGAGCUGAUGAUGCAUGAGCC
...((((((((....(((.....)))........(((((..(((((((((..((((((.(.((.(((((....)))))....)).).))).)))..)))))))))..))))))))))))) ( -39.70)
>DroYak_CAF1 4092 120 - 1
CAAGGUUCGUGUCCCGGCUAAGCACCUCUUCAGACGUCACAGGCUCUUUCUGUUUGUUAGUAUUGCAGUUACUGCUGCUUUUGUUUGGACUAGAAUUAGGGAGCUGAUGAUGCAUGAGCC
...(((((((((..((....(((.((..((((((((..((((((.......)))))).......(((((....)))))...))))))))(((....))))).)))..))..))))))))) ( -35.10)
>consensus
CAGGGUUCGUGUCUCGGCUAAGUGCCUCUUCAGACGUCACAGGCUCUUUCUGUUUGUUGGUAUUGCAGUUACUGCUGCUUUUGUUUGGACUAGAAUUAGGGAGCUGAUGAUGCAUGAGCC
...(((((((((...(((.....))).........((((..((((((((...((((((.(.((.(((((....)))))....)).).))).)))...))))))))..))))))))))))) (-36.34 = -36.40 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:31 2006