Locus 1911

Sequence ID 2L_DroMel_CAF1
Location 5,222,727 – 5,222,846
Length 119
Max. P 0.661649
window3063

overview

Window 3

Location 5,222,727 – 5,222,846
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.14
Mean single sequence MFE -26.71
Consensus MFE -23.65
Energy contribution -23.90
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.57
Structure conservation index 0.89
SVM decision value 0.27
SVM RNA-class probability 0.661649
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5222727 119 - 22407834
AAACAAAUCACCUUGUGCCAGCCACGAACCGUAAAA-AAUAUGGCACAUUCGCUUUGGCAUUAAAGGCGUUUUUAUGAAUGAACUCAACUGCAAGCGGCUGAAUGCAAUUAAAUGCGAAA
.............(((((((................-....)))))))((((((((((((((..((.(((((.(((((......)))..)).))))).)).)))))...)))).))))). ( -26.45)
>DroSec_CAF1 237 108 - 1
AAACAAAUCACCUUGUGCCAGCCACGAACCGUAAAA-AAUAUGGCACAUUCGCUUUGGCAUUAAAGGCGUUUUUAUGAAUGA-----------AGCGGCUGAAUGCAAUUAAAUGCGAAG
.............(((((((................-....)))))))((((((((((((((..((.((((((.......))-----------)))).)).)))))...)))).))))). ( -27.55)
>DroSim_CAF1 1077 119 - 1
AAACAAAUCACCUUGUGCCAGCCACGAACCGUAAAA-AAUAUGGCACAUUCGCUUUGGCAUUAAAGGCGUUUUUAUGAAUGAACUCAACUGCAAGCGGCUGAAUGCAAUUAAAUGCGAAA
.............(((((((................-....)))))))((((((((((((((..((.(((((.(((((......)))..)).))))).)).)))))...)))).))))). ( -26.45)
>DroYak_CAF1 1141 120 - 1
AAACAAAUCACCUUGUGCCAGCCACGAACCGUAAAAAAAAAUGGCACAUUCGCUUUGGCAUUAAAGGCGUUUUUAUGAAUGAACUCAACUGCAAGCGGCUGAAUGCAAUUAAAUGCGAAA
.............(((((((.....................)))))))((((((((((((((..((.(((((.(((((......)))..)).))))).)).)))))...)))).))))). ( -26.40)
>consensus
AAACAAAUCACCUUGUGCCAGCCACGAACCGUAAAA_AAUAUGGCACAUUCGCUUUGGCAUUAAAGGCGUUUUUAUGAAUGAACUCAACUGCAAGCGGCUGAAUGCAAUUAAAUGCGAAA
.............(((((((.....................)))))))((((((((((((((..((.(((((....................))))).)).)))))...)))).))))). (-23.65 = -23.90 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:18 2006