Locus 1909

Sequence ID 2L_DroMel_CAF1
Location 5,218,589 – 5,218,709
Length 120
Max. P 0.605320
window3060

overview

Window 0

Location 5,218,589 – 5,218,709
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 85.83
Mean single sequence MFE -38.79
Consensus MFE -26.33
Energy contribution -27.89
Covariance contribution 1.56
Combinations/Pair 1.20
Mean z-score -1.65
Structure conservation index 0.68
SVM decision value 0.15
SVM RNA-class probability 0.605320
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5218589 120 - 22407834
GCCUCUUUCAGCUCCUUCUGGAUGGCCUCGGCAUCCUCCUCUUCCAGGAAAUGGGCAGCGAUGCUGCAGAAGCCGUCGAAGUUAACCUUGCCGGUGUCCUCCGGAUCGUUGUCGUCGAUC
(((...(((((......))))).))).(((((.((((........))))....(((((((((.(((.((..((((.(((.(....).))).))))...)).))))))))))))))))).. ( -40.60)
>DroPse_CAF1 5290 120 - 1
GCCUCCUUCAGCUCCUUUUGAAUGGCCUCGGCAUCCUCCUCCUCGAGGAAAUGGGCGGCAAUGGCACAGAAGCCAUCGAAAUUCACCUUGCCCGUGUCCUCGGGAUCGUUAUCGUCGACC
(((...(((((......))))).))).(((((.......(((.((((((.((((((((..(((((......))))).(.....)...)))))))).)))))))))........))))).. ( -41.06)
>DroWil_CAF1 4588 120 - 1
GCCUCCUUCAGUUCCUUCUGAAUGGCCUCGGCAUCUUCCUCCUCGAGAAAAUGGGCUGCUAUGUUACAAAAGCCAUCAAAGUUAACUUUACCAGUAUCUUCUGGAUCGUUUUCAUCGAUA
(((.(((((((......))))).))....)))..........(((((((((((((((.............))))...((((....)))).((((......))))..))))))).)))).. ( -31.32)
>DroPer_CAF1 5430 120 - 1
GCCUCCUUCAGCUCCUUUUGGAUGGCCUCGGCAUCCUCCUCCUCGAGGAAAUGGGCGGCAAUGGCACAGAAGCCAUCGAAAUUCACCUUGCCCGUGUCCUCGGGAUCGUUAUCGUCGACC
((((((.............))).))).(((((.......(((.((((((.((((((((..(((((......))))).(.....)...)))))))).)))))))))........))))).. ( -42.18)
>consensus
GCCUCCUUCAGCUCCUUCUGAAUGGCCUCGGCAUCCUCCUCCUCGAGGAAAUGGGCGGCAAUGGCACAGAAGCCAUCGAAAUUAACCUUGCCCGUGUCCUCGGGAUCGUUAUCGUCGACC
(((...(((((......))))).))).(((((.........((((((((.(((((((((.(((((......))))).).........)))))))).)))))))).........))))).. (-26.33 = -27.89 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:15 2006