Locus 1908

Sequence ID 2L_DroMel_CAF1
Location 5,217,400 – 5,217,503
Length 103
Max. P 0.569284
window3059

overview

Window 9

Location 5,217,400 – 5,217,503
Length 103
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 87.88
Mean single sequence MFE -19.58
Consensus MFE -17.69
Energy contribution -18.19
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.33
Structure conservation index 0.90
SVM decision value 0.07
SVM RNA-class probability 0.569284
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5217400 103 - 22407834
CAAUUCCACAGGCUCUUUGCCGUUUGCUGACUACUUGCUGGCUACCCAC-UCUACCCAUAGCCACUAGUGCUGCGGUUAACCACACACCCAUCCGAUCCUCAAC
..........(((.....)))(((.((((..((((.(.((((((.....-........))))))).))))...)))).)))....................... ( -19.72)
>DroSec_CAF1 6630 101 - 1
CAAUUCCACAGGCUCUUUGCCGUUUGCUGACUACUUGCUGGCUACCCAC---UACCCAUAGCCACUAGUGCUGCGGUUAACCACACACCCAUCCGAUCCUCAAC
..........(((.....)))(((.((((..((((.(.((((((.....---......))))))).))))...)))).)))....................... ( -19.90)
>DroSim_CAF1 6643 101 - 1
CAAUUCCACAGGCUCUUUGCCGUUUGCUGACUACUUGCUGGCUACCCAC---UGCCCAUAGCCACUAGUGCUGCGGUUAACCACACACCCAUCCGAUCCUCAAC
..........(((.....)))(((.((((..((((.(.((((((.....---......))))))).))))...)))).)))....................... ( -19.90)
>DroYak_CAF1 12879 89 - 1
CGAUUCCACAGGCUCUUCGCCAUUUGCUGACUACUUGCUGGCUACCCACCACUACCCAAAGCCACUAGUGCUGCGGUUAACCAGACACC---------------
..........(((.....)))..............((((((..(((((.(((((...........))))).)).)))...)))).))..--------------- ( -18.80)
>consensus
CAAUUCCACAGGCUCUUUGCCGUUUGCUGACUACUUGCUGGCUACCCAC___UACCCAUAGCCACUAGUGCUGCGGUUAACCACACACCCAUCCGAUCCUCAAC
..........(((.....)))(((.((((..((((.(.((((((..............))))))).))))...)))).)))....................... (-17.69 = -18.19 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:14 2006