| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,214,495 – 5,214,604 |
| Length | 109 |
| Max. P | 0.631415 |
| Location | 5,214,495 – 5,214,604 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 74.70 |
| Mean single sequence MFE | -27.14 |
| Consensus MFE | -17.84 |
| Energy contribution | -17.32 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.631415 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5214495 109 + 22407834 UGUAGAUGGGCUCGUAGCUCUUAGUGUUCUUGAUGGCCGCGAUUACCUUUGCGGUCAUAUGGUGGAUGCUGGCAUCCUGCAGCUCCUCCAUGCCGAUAGCUCCUUGACC .((.((.(((((....((..............((((((((((......))))))))))((((.(((.((((........))))))).))))))....))))).)).)). ( -37.50) >DroVir_CAF1 1877 91 + 1 UAUAGAUGGGCUCAUAGCAUUUGGUAUUCUUAAUGGCUGUUAUAACUUUUGCGGUCGUGUGAUGAAUGCUACUAUCCUGUAGCUCCUCCAU------------------ ....((.(((((.((((.((.((((((((...((((((((..........)))))))).....))))))))..)).))))))))).))...------------------ ( -26.50) >DroGri_CAF1 8778 91 + 1 UAUAGAUGGGCUCAUAGCACUUGGCACUCUUGAUCGCCGCAAUUACUUUGGCAGUCAUGUGGUGUAUGCUGCUAUCCUGCAGCUCCUCCAU------------------ ....((.((((((((((((....(((((..((((.((((.........)))).))))...)))))....)))))...)).))))).))...------------------ ( -26.80) >DroEre_CAF1 3703 103 + 1 UGUAGAUGGGCUCAUAGCUCUUUGUGUUCUUGAUGGCCGCGAUUACCUUGGCGGUCAUGUGGUGGAUACUAGCAUCCUGCAGCUCCUCCAUGCCGAUAAC-CCU----- ..((((.((((.....)))))))).(((.(((((((((((.(......).))))))))((((.(((..((.((.....)))).))).))))..))).)))-...----- ( -29.80) >DroWil_CAF1 1882 96 + 1 UGUAGAUGGGCUCAUAACAUUUAGUAUUUUUAAUCGCCGAAAUCACCUUGGCUGUCAUGUGAUGUAUACUGGCGUCUUGAAGCUCCUCCAUGCUGU------------- .(((((.(((((((..((.................(((((.......))))).((((.(((.....)))))))))..)).))))).))..)))...------------- ( -19.90) >DroMoj_CAF1 2009 91 + 1 UGUAGAUGGGCUCAUAACACUUGGUAUUCUUGAUGGCAGCAAUUAGUUUAGCUGUCAUAUGGUGUAUACUACUAUCCUGCAGCUCCUCCAU------------------ ....((.(((((((.......((((((.((..((((((((..........))))))))..))...))))))......)).))))).))...------------------ ( -22.32) >consensus UGUAGAUGGGCUCAUAGCACUUGGUAUUCUUGAUGGCCGCAAUUACCUUGGCGGUCAUGUGGUGUAUACUACCAUCCUGCAGCUCCUCCAU__________________ ....((.(((((((.......((((((.((..((((((((.(......).))))))))..))...))))))......)).))))).))..................... (-17.84 = -17.32 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:09 2006