Locus 1902

Sequence ID 2L_DroMel_CAF1
Location 5,208,198 – 5,208,318
Length 120
Max. P 0.515210
window3050

overview

Window 0

Location 5,208,198 – 5,208,318
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.17
Mean single sequence MFE -33.26
Consensus MFE -25.40
Energy contribution -26.44
Covariance contribution 1.04
Combinations/Pair 1.25
Mean z-score -1.50
Structure conservation index 0.76
SVM decision value -0.04
SVM RNA-class probability 0.515210
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5208198 120 + 22407834
CACUCCCACGCCGCUGUUGAAAAUGAUAAAGCGUGUGUUCAAUACCUCCUUUGAGUUCAUCUUCUACAGCGUUGUUACCAACCUGUGGCAAAAGGUGCGCAAGUUCUACAGCGUACCGUU
.........((((((((.(((.(((((((((.((((.....))))...)))))...)))).))).)))))((((....))))....)))....(((((((..........)))))))... ( -35.50)
>DroSec_CAF1 85149 120 + 1
CACGCCCACGCCGCUGUUGAAAAUGAUAAAGCGUGUGUUCAAUACCUCCUUUGAGUUCAUCUUCUACAGCGUUAUUACCAACCUGUGGCAGAAGGUGCGCAAGUUCUACAGCGUACCGUU
...(((.((...(((((.(((.(((((((((.((((.....))))...)))))...)))).))).)))))(((......)))..)))))....(((((((..........)))))))... ( -33.40)
>DroSim_CAF1 58124 120 + 1
CACGCCCACGCCGCUGUUGAAAAUGAUAAAGCGUGUGUUCAAUACCUCCUUUGAGUUCAUCUUCUACAGCGUUGUUACAAACCUGUGGCAGAAGGUGCGCAAGAUCUACAGCGUACCGUU
...........((((((.(((.(((((((((.((((.....))))...)))))...)))).))).))))))((((((((....))))))))..(((((((..........)))))))... ( -35.70)
>DroEre_CAF1 88850 120 + 1
CACCCCAACUCCCCUGGUGGCAAUGAUCCAGCGGGUGUUUAACUCAUCCUCUAAGUUCAUCUUAUACAGCGUGCUCGCCAACAUCUGGCCGCCAAUUCGCAAAUUCUACAGUUUACCUUU
..............(((((((.((((...((.(((((.......))))).))....))))........(((....))).........))))))).......................... ( -24.30)
>DroYak_CAF1 87281 120 + 1
CAAGACCACGCCGCUGUUGAAAAUGAUAAAGCGUGUGUUCAAUACCUCCUUUGAGUUCAUCUUCUACAGCGUGGUCACCAACCUGUGGCAGAAGGUGCGCCAGUUCUACAGCGUACCGUU
...((((((...(((((.(((.(((((((((.((((.....))))...)))))...)))).))).))))))))))).(((.....))).....(((((((..........)))))))... ( -37.40)
>consensus
CACGCCCACGCCGCUGUUGAAAAUGAUAAAGCGUGUGUUCAAUACCUCCUUUGAGUUCAUCUUCUACAGCGUUGUUACCAACCUGUGGCAGAAGGUGCGCAAGUUCUACAGCGUACCGUU
...........((((((.(((.(((((((((.((((.....))))...)))))...)))).))).))))))(((((((......)))))))..(((((((..........)))))))... (-25.40 = -26.44 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:05 2006