Locus 19

Sequence ID 2L_DroMel_CAF1
Location 73,242 – 73,334
Length 92
Max. P 0.878206
window31

overview

Window 1

Location 73,242 – 73,334
Length 92
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 68.84
Mean single sequence MFE -15.81
Consensus MFE -5.48
Energy contribution -6.52
Covariance contribution 1.04
Combinations/Pair 1.08
Mean z-score -2.01
Structure conservation index 0.35
SVM decision value 0.90
SVM RNA-class probability 0.878206
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 73242 92 - 22407834
----CUGCUUUAAAAUCGCAGUGGCGCCAUUAUACACAACUCAUUUAA-ACUACAUAGUGAAGUGCCUGAACUUAA-----UUAAAAC-AACAGUGGCGCCAU-----------------
----((((.........))))((((((((((...(((...........-........)))((((......))))..-----.......-...)))))))))).----------------- ( -23.41)
>DroSec_CAF1 45368 92 - 1
ACUAUUGGUUUAAUAUCGCAGA---GCCACUAUACACAACUCAUUUAA-A--ACAUAGUGAAGUGACUAAACUCAAC----UUAAAAC-UACAGUGGCGCCAU-----------------
.....((((......((...))---((((((.........(((((...-.--....)))))(((......)))....----.......-...)))))))))).----------------- ( -14.00)
>DroSim_CAF1 47796 92 - 1
ACUAUUGGUUUAAUAUCGCAGA---GCCACUAUACACAACUCAUUUAA-A--ACAUAGUGAAGUGACUAAACUCAAC----UUAAAAC-UACAGUGGCGCCAU-----------------
.....((((......((...))---((((((.........(((((...-.--....)))))(((......)))....----.......-...)))))))))).----------------- ( -14.00)
>DroEre_CAF1 52185 95 - 1
ACAUUUGCUUUAAUAACACAGUACCACCACUAUAGCCAAUUCACUUAAAA--CCAUAAUGAA-CCACAAAACUCAACUUAUUUAAAAC-AACAGUGGGA---------------------
..........................(((((..((........)).....--......(((.-.........))).............-...)))))..--------------------- (  -3.90)
>DroYak_CAF1 45882 117 - 1
ACAUAUGCUUUAAUAAAACAGUGACACCACUAUACAAAAAUCAUUUAA-A--CAUUAGUGAAGCCACUAAACCCAUCUAAUUUAAAAAAAACAGUGGCGGCACUAUACUCACAUUAAAGC
......((((((((.....((((....)))).................-.--...(((((..((((((........................))))))..))))).......)))))))) ( -23.76)
>consensus
ACAAUUGCUUUAAUAUCGCAGU__CGCCACUAUACACAACUCAUUUAA_A__ACAUAGUGAAGUGACUAAACUCAAC____UUAAAAC_AACAGUGGCGCCAU_________________
.........................((((((.........(((((...........))))).((......))....................))))))...................... ( -5.48 =  -6.52 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:25 2006