| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,201,603 – 5,201,717 |
| Length | 114 |
| Max. P | 0.574083 |
| Location | 5,201,603 – 5,201,717 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 79.42 |
| Mean single sequence MFE | -40.84 |
| Consensus MFE | -25.65 |
| Energy contribution | -25.57 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.574083 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5201603 114 - 22407834 UGUUGUGCGUCCUGCAACUUCUUCUCUAGACUCUCCAGACGUUGGAGCACCGCUUUCGGCUCCGCUUUGGAGGUCUGUUGAUUCUCUGCGCUGGGCAAUUGUUCCAAAGCCUUU ........((((((((......((..(((((.(((((((.((.(((((..........)))))))))))))))))))..)).....))))..)))).................. ( -34.10) >DroSec_CAF1 78771 114 - 1 UGCUGGGCGUCCUGCAACUUCUUCUCUAGGCUCUCCAGACGCUGGAGCACCGCUUUCGGCUCCGCCUUGGAGGUCUGUUGGUCCUCCGCGCUGGGCAAUUGUUCCAAAGUCUUU ((((.(((((.................((((.((((((...))))))..(((....)))....)))).(((((.(.....).)))))))))).))))................. ( -37.50) >DroEre_CAF1 80908 114 - 1 UGCUGGGCGUCCUGCAGCUUCUUCUCCAGGCUCUCCAGUCGUUGGAGCACAGCUUUGGGCUGCGCCUUUGAGGUCUGCUGAUCCUCCACGCUUGGCAAUUGUUCCAGGGCCUUU (((..(((((....((((..((((...((((.((((((...))))))..((((.....)))).))))..))))...)))).......)))))..)))................. ( -40.40) >DroYak_CAF1 80651 114 - 1 UGUUGGGCGUCCUGCAGCUUCUUUUCCAGGCUCUCCAAUCGUUGGAGCACCGCUUUGGGCUGCGCCUUGGAGGUCUGCUGAUCCUCCACGCUUGGCAGUUGUUCCAAAGCCUUU (((..(((((...(((((((........((..(((((.....)))))..)).....))))))).....(((((((....)).))))))))))..)))................. ( -41.52) >DroMoj_CAF1 139326 114 - 1 UGCUCGGCCUGCUGCAGCUUGCGCUCUAGUCCAUCCAGGCGCUGGAGCACAGCCUUCGGCUCGUUGCUAUCUGCCAGCUGAUCCUCAGCGCUGGGCACCUGUUCGAGUGCCUUC .((..(((.....(((((.((.((((((((((.....)).)))))))).))(((...)))..))))).....))).((((.....)))))).((((((........)))))).. ( -46.10) >DroAna_CAF1 81853 114 - 1 UGUUGGGCAUCCUGCAGCUUCUUCUCCAGGCUCUCCAAUCGCUGGAUGACCACUUUUGGGUCAGCCUUGGAGCUCUGCUGAUCCUCCAGGCUGGGCAGCUGCUCGAGGGCCUUU ....((((.((..((((((.....(((((((..((((.....))))(((((.(....))))))))).))))((((.(((.........))).))))))))))..))..)))).. ( -45.40) >consensus UGCUGGGCGUCCUGCAGCUUCUUCUCCAGGCUCUCCAGUCGCUGGAGCACCGCUUUCGGCUCCGCCUUGGAGGUCUGCUGAUCCUCCACGCUGGGCAAUUGUUCCAAAGCCUUU ((((.(((((....((((....((((((((..((((((...))))))....((.....)).....))))))))...)))).......))))).))))................. (-25.65 = -25.57 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:00 2006