| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,198,743 – 5,198,863 |
| Length | 120 |
| Max. P | 0.874917 |
| Location | 5,198,743 – 5,198,863 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.12 |
| Mean single sequence MFE | -30.75 |
| Consensus MFE | -20.54 |
| Energy contribution | -21.23 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.874917 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5198743 120 - 22407834 UGCCCCCUCUUUUGAAUGAAUCGUAAAACUGUACGAUCGUUAAUCAGCCAAGCUUCCGUUUAUAUUUAUGGUGGCAUUGAUUUAAAAGGGGAAAGCUCUUUAGAGCUCUUAAAGAAUGCG .((..((((((((((((((.(((((......)))))))..........((((((.((((........)))).))).)))))))))))))))..(((((....)))))..........)). ( -33.70) >DroSec_CAF1 75927 117 - 1 UGCCCCU--UUUUGAAUGAAUCGUAAAACUGUACGAUCGUUAAUCAGCCAAGCUUCCGUUUAUAUUUAUGGUGGCUUUGAUUUAA-AGGGGAAAGCACUUUAGAGCUUUUAAAGAGUGCG ..(((((--((...(((((.(((((......))))))))))(((((...(((((.((((........)))).)))))))))).))-)))))...(((((((...........))))))). ( -35.80) >DroSim_CAF1 48704 117 - 1 UGCCCCU--UUUUGAAUGAAUCGUAAAGCUGUACGAUCGUUAAUCAGCCAAGCUUCCGUUUAUAUUUAUGGUGGCUUUGAUUUAA-AGGGGAAAGCACUUUAGAGCUCUUAAAAAAUGCG ..(((((--((...(((((.(((((......))))))))))(((((...(((((.((((........)))).)))))))))).))-)))))...(((.(((((....))...))).))). ( -30.20) >DroYak_CAF1 77810 107 - 1 UACC--U--UCUUGAAUGAAUCGUUAAAGUGUACGAUCGUUA--------AUCAGCCAUUUAUAUUCAUGGUUCAUUUGAUUUAG-ACGCGAAAGCACUUCAUACCUCUUGAAGAAUGCA ...(--(--..(..((((((((((...((((((.(((.(((.--------...))).))))))))).))))))))))..)...))-..((....)).(((((.......)))))...... ( -23.30) >consensus UGCCCCU__UUUUGAAUGAAUCGUAAAACUGUACGAUCGUUAAUCAGCCAAGCUUCCGUUUAUAUUUAUGGUGGCUUUGAUUUAA_AGGGGAAAGCACUUUAGAGCUCUUAAAGAAUGCG ..((((........(((((.(((((......))))))))))..........(((.((((........)))).)))............))))...(((((((((.....))))))..))). (-20.54 = -21.23 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:56 2006