Locus 1893

Sequence ID 2L_DroMel_CAF1
Location 5,194,122 – 5,194,242
Length 120
Max. P 0.500000
window3039

overview

Window 9

Location 5,194,122 – 5,194,242
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.56
Mean single sequence MFE -33.84
Consensus MFE -18.50
Energy contribution -19.45
Covariance contribution 0.95
Combinations/Pair 1.45
Mean z-score -2.08
Structure conservation index 0.55
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5194122 120 + 22407834
GUUCCCGACUUAUCUGCCGUAACUUCCGCAGACUACGAUCAAUACACCACUCUGUACCAAUCCCUGAGCAAUGAUAUCUCACAUCACUAUGUGAAAAUGACACAGCUUUCGGGAAUAGCC
((((((((....(((((.(......).)))))....(((...((((......))))...)))...((((..((.(((.((((((....))))))..))).))..)))))))))))).... ( -27.50)
>DroVir_CAF1 111354 120 + 1
GUGCCAGAUCUGUCGGCGGUGACCUCUGCCGAUUACGAUCAGUAUGCGACGCUCUAUCAAUCCCUUAGCAAUGACAUCUCGCAUCAUUAUGUGAAGAUGACGCAGCUCUCGGGCAUUGCU
(((((.((((.((((((((......))))))))...))))(((.((((..(((.............))).....((((((((((....))))).))))).)))))))....))))).... ( -40.82)
>DroGri_CAF1 102901 120 + 1
GUGCCCGAUCUGUCGGCAGUUACCUCCGCCGACUAUGAUCAGUAUGCGACGCUCUAUCAAUCCCUGAGCAAUGACAUCUCCCAUCAUUAUGUAAAAAUGACGCAGCUCUCGGGUAUUGCC
((((((((((.((((((.(......).))))))...))))(((.((((..((((...........))))..............(((((.......))))))))))))...)))))).... ( -37.40)
>DroWil_CAF1 79120 120 + 1
GUACCCGAUCUUUCAGCCGUUACAUCGGCCGAUUACGAUCAGUACACAACGCUUUAUCAAUCCCUGAGCAAUGAUAUUUCCCAUCAUUAUGUAAAGAUGACUCAACUUUCCGGUAUAGCA
((((..((((..((.((((......)))).))....)))).)))).....(((.((((...........((((((.......))))))..(.((((.((...)).)))).))))).))). ( -25.70)
>DroMoj_CAF1 131352 120 + 1
GUGCCAGAUCUUUCGGCGGUUACAUCCGCCGACUAUGAUCAAUAUGCCACGCUCUACCAAUCCCUGAGCAACGACAUCUCGCACCACUAUGUCAAGAUGACGCAGCUGUCGGGCAUAGCC
..((..((((..(((((((......)))))))....))))..((((((..((((...........))))..(((((.((.((..((((......)).))..)))).))))))))))))). ( -43.10)
>DroAna_CAF1 74385 120 + 1
GUGCCUGAUCUAUCGGCUGUGACCUCGGCGGACUACGACCAGUACACCACGCUCUACCAAUCCCUGAGCAACGACAUCUCCCACCACUACGUGAAGAUGACCCAGCUUUCUGGAAUUGCC
((((.((.((((((.((((......)))).)).)).)).)))))).....((((...........)))).....(((((..(((......))).)))))..((((....))))....... ( -28.50)
>consensus
GUGCCCGAUCUAUCGGCCGUUACCUCCGCCGACUACGAUCAGUACACCACGCUCUACCAAUCCCUGAGCAAUGACAUCUCCCAUCACUAUGUGAAGAUGACGCAGCUUUCGGGAAUAGCC
(((((.((((..(((((((......)))))))....)))).........................((((..((.(((((..((......))...))))).))..))))...))))).... (-18.50 = -19.45 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:54 2006