Locus 1892

Sequence ID 2L_DroMel_CAF1
Location 5,191,559 – 5,191,670
Length 111
Max. P 0.573565
window3038

overview

Window 8

Location 5,191,559 – 5,191,670
Length 111
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 81.31
Mean single sequence MFE -39.83
Consensus MFE -28.48
Energy contribution -28.18
Covariance contribution -0.30
Combinations/Pair 1.40
Mean z-score -1.32
Structure conservation index 0.72
SVM decision value 0.08
SVM RNA-class probability 0.573565
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5191559 111 - 22407834
CUCGUCUGCACUGCAGUCUCAUCUAAUUUGGGUUGAUGCUGUGGUGAAGUCUGCACGGAUUUAAUAUCCUGCUCGAC---UUCCGAUUUUUCAGUGGGCGAUGGAAUACGCGGU
.(((((..(((..((((.(((.((......)).))).))))..))((((((.(((.((((.....)))))))..)))---)))..........)..)))))............. ( -38.50)
>DroSec_CAF1 68725 111 - 1
CUCGUCUGCACUGCAGUUUCAUCCAGUUUGGGUUGAUGCUGUGGUGAAGUCUGCACGGAUUUAAUAUCCUGUUCGAC---UUCCGAUUUUUCCGUGGGCGAGGGAAUACGCGGU
((((((..(((..((((.((((((.....))).))).))))..))((((((.(((.((((.....)))))))..)))---)))..........)..))))))............ ( -42.40)
>DroEre_CAF1 71023 111 - 1
CUCGUCUGCACUGCAGUCUCGUCCAGCUUGGGUUGAUGCUGCGGCGAAGUUUGCACGGAUUUAAUAUCCUGUUCGAC---UUCCGGCUUUUCAGUGGGCGAGGGAACACGCGGU
((((((..(.(((((((.(((.((......)).))).))))))).((((((.(((.((((.....)))))))..)))---)))..........)..))))))............ ( -40.40)
>DroYak_CAF1 70484 111 - 1
CUCGUCUGCACUGCAGUCUCAUCCAGGGUGGGUUGAUGCUGUGGCGAAGUCUGCACGGACUUUAUAUCCUGUUCGAC---UUCCGAUUUUUCAGUGGGCGAGGGAACUCGUGGU
((((((..(.(..((((.((((((.....))).))).))))..).((((((.(((.(((.......))))))..)))---)))..........)..))))))............ ( -38.70)
>DroAna_CAF1 71804 114 - 1
CUCGUCUGCACAGCGAUCUCAUCCAAUGUGGGCUGGUGUUGCGGCGAUGUCUGUACGGAUUUGAUAUCCUGCUCUACCGGUUCGGGCGCUUCAGUGGGCGAGGGAACGCGUGGU
........(((.(((.((((......(.((((((((((..((((.((((((...........))))))))))..)))))))))).)((((......)))).)))).)))))).. ( -42.60)
>DroPer_CAF1 81995 111 - 1
CUCGUCUGCACUGACAUCUCAUCCAGUUUCGGUUGAUGCUGUGGCGAUGUCUGCACGGACUUGAUGUCCUGCUCAAU---CUUCGCGGCUUCUACAGGCGUUGCGGCACGUGGU
(.(((((((((((.....(((.((......)).))).(((((((.(((....(((.((((.....)))))))...))---).))))))).....)))....))))).))).).. ( -36.40)
>consensus
CUCGUCUGCACUGCAGUCUCAUCCAGUUUGGGUUGAUGCUGUGGCGAAGUCUGCACGGAUUUAAUAUCCUGCUCGAC___UUCCGAUUUUUCAGUGGGCGAGGGAACACGCGGU
(((((((((.(((((((.(((.((......)).))).))))))).((((...(((.((((.....)))))))(((........)))..)))).)))))))))............ (-28.48 = -28.18 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:53 2006