Locus 1891

Sequence ID 2L_DroMel_CAF1
Location 5,190,903 – 5,191,002
Length 99
Max. P 0.788376
window3037

overview

Window 7

Location 5,190,903 – 5,191,002
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 76.63
Mean single sequence MFE -33.35
Consensus MFE -21.00
Energy contribution -23.92
Covariance contribution 2.92
Combinations/Pair 1.37
Mean z-score -1.53
Structure conservation index 0.63
SVM decision value 0.58
SVM RNA-class probability 0.788376
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5190903 99 - 22407834
GAGUUGAGUGGCGGCACGCAGGUCGAUUGGGCCAGAAGCUGGUUGUUUCUCAAUAACGGGCUCUUCUGGCUUUUCCUCAGUCUGCUCAACAAUUGCAAU
..((((((((....)))(((((..((..((((((((((((.((((((....)))))).))))..))))))))....))..))))))))))......... ( -38.20)
>DroSec_CAF1 68072 99 - 1
GAGUUGAGUGGCGGCACGCAGGUCGAUUUGGCCAGGAGCUGGUUGUUUCUCAAGAACGGGCUCUUCUGGCUUUUGCUCAGUCUGCUCAACAAUUUCAAU
..((((((((....)))(((((..((...(((((((((((.(((.((....)).))).)))))..)))))).....))..))))))))))......... ( -36.40)
>DroSim_CAF1 40872 99 - 1
GAGUUGAGUGGCGGCACGCAGGUCGAUUUGGCCAGGAGCUGGUUGUAUCUCAAGAACGGGCUCUUCUGGCUCUUGCUCAGUCUGCUCAACAAUUCCAAU
..((((((((((.....(((((.......(((((((((((.(((.(......).))).)))))..)))))))))))...))).)))))))......... ( -36.41)
>DroEre_CAF1 70385 84 - 1
GAGUUGCGUGGCGGCUCGCAGAUCGAUUUGACCAGGAGCUGGUUGUUUCCCAACAACGAGCUCUUCGGG---------------CUCAACAAUGUCAGU
(((((((...)))))))...(((....((((((.((((((.((((((....)))))).))))))...))---------------.))))....)))... ( -31.00)
>DroYak_CAF1 69843 99 - 1
GAGUUGAGUGGCGGCACGCAAGUCGAUUUGACCAGGUGUUGGUUGUGUACCCACAACGAGUUCUUCUGGCUUUUGGUCAGUCUGCUCAACAAUGUCAAU
..((((((..(((((......))))..(((((((((.(((.((((((....)))))).((.....))))).))))))))).)..))))))......... ( -32.70)
>DroAna_CAF1 71181 99 - 1
GAGCUGAGUGGCCACGCGCAGGUCAGUCUGGCUGGGAGCGGGAUUCUUCUCCAAAAUAGUGUCUACAGGUUUCUGUUCAGUCGUUUCAACGGUUACAAU
.......((((((..((.((((....))))))..(((((((((......))).......((...((((....)))).))..))))))...))))))... ( -25.40)
>consensus
GAGUUGAGUGGCGGCACGCAGGUCGAUUUGGCCAGGAGCUGGUUGUUUCUCAACAACGGGCUCUUCUGGCUUUUGCUCAGUCUGCUCAACAAUUUCAAU
..(((((((((((((......))))....(((((((((((.((((((....)))))).)))))..))))))..........)))))))))......... (-21.00 = -23.92 +   2.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:51 2006