Locus 1886

Sequence ID 2L_DroMel_CAF1
Location 5,184,683 – 5,184,773
Length 90
Max. P 0.608550
window3030

overview

Window 0

Location 5,184,683 – 5,184,773
Length 90
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 75.17
Mean single sequence MFE -21.83
Consensus MFE -10.36
Energy contribution -10.48
Covariance contribution 0.11
Combinations/Pair 1.19
Mean z-score -1.83
Structure conservation index 0.47
SVM decision value 0.15
SVM RNA-class probability 0.608550
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5184683 90 + 22407834
GACGGCAUUACAGAAACUGUAGUGACAACCACGACGACCACGAU------------------AACCGAUCGCGUUGUAGAA---AAGACUGAACCAGAUGCAUCGUCAUUA
(((((((((((((...))))))))......((((((....((((------------------.....))))))))))....---..................))))).... ( -20.60)
>DroVir_CAF1 101610 105 + 1
GACAUCAUUACUGAAACUGUAGUGAAAACGACCACGAUUAC---AGAAUCAAGCAAAUUGAUAACUGAUCACGUUGUAGAU---AAGACUGAACCAGAAUCAUCGUCAAUU
(((.(((((((.......)))))))..(((((...(((((.---...(((((.....)))))...)))))..))))).(((---.(..(((...)))..).)))))).... ( -20.30)
>DroGri_CAF1 92915 105 + 1
GACAUCAUUACUGAAACUGUAGUGAAAACGACGACGAUUAC---UGAAUCAAGCAAAUUGAUAACAGAUCACGUUGUAGAU---AAGACUGAAACAGAGACAUCGUCAAAU
(((.(((((((.......)))))))..((((((..(((..(---((.(((((.....)))))..)))))).)))))).(((---....(((...)))....)))))).... ( -21.90)
>DroWil_CAF1 69559 108 + 1
GACAUCAUUACAGAAACUGUAGUGACAACGACUACGAUUAC---AGAGUCAAGUAAAUUGACAUCUGAUCAAAUUGUAGAAGAUAAGACUGAAACAGAGACAUCGUCAUUU
(((.(((((((((...)))))))))......((((((((.(---((((((((.....))))).))))....))))))))..(((....(((...)))....)))))).... ( -28.90)
>DroMoj_CAF1 121070 105 + 1
GACAUCAUUACUGAAACUGUAGUGAAAACGACCACGGUUAC---AGAAUCAAGCAAAUUGAUAACUGAUAACGCUGUAGAU---AAGACUGAACCAGAAGCAUCGUCAAUU
(((.(((((((.......)))))))..........((((.(---((.(((((.....)))))...........((......---.)).))))))).........))).... ( -20.00)
>DroAna_CAF1 65085 87 + 1
GA---CAUUACAGAAACUGUAGUGACCACCACGACGACCACGAU------------------UACGGAUCGCGUUGUUGAA---AAGACUGAACCAGAAGCAUCGUCAUUA
..---((((((((...))))))))........(((((...((((------------------.(((.....))).))))..---....(((...))).....))))).... ( -19.30)
>consensus
GACAUCAUUACAGAAACUGUAGUGAAAACGACGACGAUUAC___AGAAUCAAGCAAAUUGAUAACUGAUCACGUUGUAGAA___AAGACUGAACCAGAAGCAUCGUCAAUU
(((.(((((((.......)))))))......(.(((((.........(((((.....)))))..........))))).).........................))).... (-10.36 = -10.48 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:45 2006